chr4 : 121,740,844 121,741,406
562 bp 100 TFs 0 linked genes
This 562 bp open chromatin element has no linked target genes and is bound by 100 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:121,735,844 – 121,746,406
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AR 5 datasets
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 64 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 176 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 92 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 266 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 68 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 562 bp overlap
ChIP H1 ENCFF399KAM 537 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 451 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 262 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 258 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 237 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 230 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 337 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 152 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 210 bp overlap
DBP 1 dataset
Motif DE_12h DE_12h-DBP_MA0639.2 10 bp overlap
ESR1 8 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 359 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 276 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 190 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 208 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 333 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 196 bp overlap
ESR2 2 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 246 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 150 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 265 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 244 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 192 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 258 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 200 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 282 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 218 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 349 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 296 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
KDM5B 2 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 136 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 146 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 216 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 291 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 211 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 311 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NKX6-3 2 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR1D2 2 datasets
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nkx2-1 2 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 226 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 182 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 420 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 460 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 274 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 171 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 408 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 184 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 297 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 166 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 338 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 273 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 115 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 172 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 141 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF24 2 datasets
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 163 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap