chr4 : 13,527,521 13,528,201
680 bp 104 TFs 1 linked gene
This 680 bp open chromatin element is linked to LINC01097 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01097 3.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,522,521 – 13,533,201
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 203 bp overlap
ASCL1 2 datasets
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 334 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 321 bp overlap
BCL6 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 166 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 292 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 120 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 341 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 261 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 339 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 111 bp overlap
ChIP H1 ENCFF095JHA 320 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 320 bp overlap
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 92 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 106 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 250 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 194 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 212 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 216 bp overlap
CTCF 8 datasets
ChIP GM04604 GSE148179.CTCF.GM04604 239 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 69 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 131 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 142 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 248 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 107 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 311 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 78 bp overlap
CTCFL 3 datasets
ChIP FT282 GSE131931.CTCFL.FT282 169 bp overlap
ChIP FT282 GSE131931.CTCFL.FT282 97 bp overlap
ChIP K-562 GSE70764.CTCFL.K-562 153 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 261 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 295 bp overlap
EGR1 8 datasets
ChIP GM12878 ENCFF092DJY 101 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 207 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 140 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 111 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 84 bp overlap
ChIP K562 ENCFF006PJY 55 bp overlap
ChIP K562 ENCFF113OPQ 213 bp overlap
ChIP K562 ENCFF895KGN 72 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF432UGA 332 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 237 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 299 bp overlap
ERG 5 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 231 bp overlap
ChIP K-562 GSE23730.ERG.K-562 172 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 169 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 385 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 569 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 207 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 77 bp overlap
EZH2 45 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 656 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 330 bp overlap
ChIP GM23248 ENCFF404ZHM 342 bp overlap
ChIP GM23338 ENCFF613YON 468 bp overlap
ChIP GM23338 ENCFF613YON 250 bp overlap
ChIP GM23338 ENCFF886DXX 428 bp overlap
ChIP H1 ENCFF232NZA 680 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 437 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 117 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 680 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 376 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 74 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 679 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 492 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 283 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 295 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 404 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 262 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 680 bp overlap
ChIP astrocyte ENCFF365JTP 473 bp overlap
ChIP astrocyte ENCFF365JTP 186 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 142 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 469 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 431 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 109 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 512 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 680 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 571 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 67 bp overlap
ChIP fibroblast of lung ENCFF479BAW 215 bp overlap
ChIP fibroblast of lung ENCFF479BAW 468 bp overlap
ChIP fibroblast of lung ENCFF479BAW 275 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 470 bp overlap
ChIP hESC GSE113817.EZH2.hESC 223 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 200 bp overlap
ChIP keratinocyte ENCFF070STK 222 bp overlap
ChIP keratinocyte ENCFF070STK 423 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 324 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 342 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 680 bp overlap
ChIP neural progenitor cell ENCFF018MKA 680 bp overlap
ChIP neural progenitor cell ENCFF472NFV 680 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 234 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 253 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 97 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 342 bp overlap
GATA2 2 datasets
ChIP ME-1 GSE46044.GATA2.ME-1 256 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 646 bp overlap
HDAC2 2 datasets
ChIP GM12878 ENCSR330OEO.HDAC2.GM12878 331 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 238 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 291 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 226 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 369 bp overlap
HNRNPLL 6 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 112 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 112 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 164 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 161 bp overlap
ChIP K562 ENCFF541ZGX 150 bp overlap
ChIP K562 ENCFF598PWW 149 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 401 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 680 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 172 bp overlap
JUN 2 datasets
ChIP Karpas-299 GSE151413.JUN.Karpas-299 91 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 299 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 217 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 133 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 56 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 251 bp overlap
MAZ 1 dataset
ChIP GM12878 ENCFF453CES 413 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 163 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 94 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 50 bp overlap
MYB 3 datasets
ChIP DU528 GSE94000.MYB.DU528 278 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 161 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 77 bp overlap
MYOD1 2 datasets
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 301 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 75 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 122 bp overlap
NR1D1 1 dataset
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 306 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 398 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 321 bp overlap
NRF1 3 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 232 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 52 bp overlap
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 134 bp overlap
Nrf1 1 dataset
Motif ES_0h ES_0h-Nrf1_MA0506.3 12 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 271 bp overlap
PAX5 5 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 135 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 136 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 157 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 51 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 196 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 390 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 114 bp overlap
POLR2A 2 datasets
ChIP GM12892 ENCFF506PGQ 144 bp overlap
ChIP neural cell ENCFF604SPB 375 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 618 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 233 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 280 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 676 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 82 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 122 bp overlap
RBM14 1 dataset
ChIP K-562 ENCSR423FCW.RBM14.K-562 193 bp overlap
RELA 8 datasets
ChIP 786-O GSE86092.RELA.786-O 168 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 166 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 157 bp overlap
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 237 bp overlap
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 129 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 216 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 140 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 244 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 540 bp overlap
ChIP H1 ENCFF239FFS 300 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 310 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 393 bp overlap
RUNX1 5 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 216 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 265 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 239 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 239 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 365 bp overlap
RUNX1T1 6 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 678 bp overlap
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 337 bp overlap
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 168 bp overlap
ChIP Kasumi-1 GSE65427.RUNX1T1.Kasumi-1 91 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 157 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 261 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 242 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 310 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 450 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 3 datasets
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 298 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 268 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SREBP2 4 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 339 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 274 bp overlap
ChIP monocyte GSE129202.SREBP2.monocyte 354 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 619 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 62 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 241 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 680 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 127 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 425 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 133 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 234 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 75 bp overlap
TCF12 2 datasets
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP Kasumi-1 GSE43834.TCF12.Kasumi-1 160 bp overlap
TCF3 3 datasets
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 107 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 455 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 680 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 117 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 214 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 106 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 405 bp overlap
ZEB1 3 datasets
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 143 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 71 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 75 bp overlap
ZNF10 1 dataset
ChIP HEK293T GSE78099.ZNF10.HEK293T 293 bp overlap
ZNF417 1 dataset
Motif ES_0h ES_0h-ZNF417_MA1727.2 7 bp overlap
ZNF454 1 dataset
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap