chr3 : 17,047,037 17,047,525
488 bp 128 TFs 0 linked genes
This 488 bp open chromatin element has no linked target genes and is bound by 128 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:17,042,037 – 17,052,525
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
128 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 132 bp overlap
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ATF2 2 datasets
ChIP GM12878 ENCFF521LQJ 488 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 189 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 338 bp overlap
BATF 4 datasets
ChIP BC-3 GSE132777.BATF.BC-3 178 bp overlap
ChIP GM12878 ENCFF954REE 213 bp overlap
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 215 bp overlap
ChIP OCI-Ly3 GSE56857.BATF.OCI-Ly3 140 bp overlap
BATF3 1 dataset
ChIP GM12878 GSE97661.BATF3.GM12878 189 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 176 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 414 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCFF521IZR 405 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 393 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 308 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 345 bp overlap
BRD4 1 dataset
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 208 bp overlap
CBX5 2 datasets
ChIP GM12878 ENCFF542UDC 323 bp overlap
ChIP GM12878 ENCSR372GIN.CBX5.GM12878 104 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 142 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 270 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 142 bp overlap
CTCF 3 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 216 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 191 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 375 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 282 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 335 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 177 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 421 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 215 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 222 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 341 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 182 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GCM1 2 datasets
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
Motif ES_0h ES_0h-GCM1_MA0646.2 10 bp overlap
GCM2 2 datasets
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
Motif ES_0h ES_0h-GCM2_MA0767.2 8 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
IKZF1 5 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ChIP GM12878 ENCFF616FJX 423 bp overlap
ChIP GM12878 ENCFF616FJX 221 bp overlap
ChIP GM12878 ENCFF753XDO 333 bp overlap
ChIP GM12878 ENCFF824TGK 321 bp overlap
IKZF2 6 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 488 bp overlap
ChIP GM12878 ENCFF918AID 488 bp overlap
ChIP GM12878 ENCFF918AID 294 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 452 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 354 bp overlap
IRF4 8 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 346 bp overlap
ChIP GM12878 ENCFF769ZDL 181 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 324 bp overlap
ChIP KK-1 GSE94732.IRF4.KK-1 329 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 224 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 250 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 257 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 391 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP Karpas-299 GSE151413.JUN.Karpas-299 488 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 252 bp overlap
JUNB 3 datasets
ChIP GM12878 ENCFF667EJQ 229 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 465 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 383 bp overlap
JUND 4 datasets
ChIP GM12878 ENCFF086GAB 280 bp overlap
ChIP GM12878 ENCFF384XFV 254 bp overlap
ChIP GM12878 ENCSR000DYS.JUND.GM12878 220 bp overlap
ChIP GM12878 ENCSR000EYV.JUND.GM12878 198 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 130 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAX 3 datasets
ChIP GM12878 ENCFF849VCQ 355 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 246 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 204 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 380 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 373 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 263 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 173 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 289 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 462 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 157 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 488 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 364 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 211 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 90 bp overlap
NR3C2 2 datasets
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
Motif ES_0h ES_0h-NR3C2_MA0727.2 15 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 181 bp overlap
POLR2A 1 dataset
ChIP GM12878 ENCFF412KAE 116 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 203 bp overlap
Pgr 2 datasets
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 7 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 297 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 201 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 337 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 231 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 488 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 290 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 189 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 345 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA5 2 datasets
ChIP GM12878 ENCFF327LDR 403 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 284 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 206 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 205 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 152 bp overlap
SP1 2 datasets
ChIP GM12878 ENCFF620LDJ 249 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 218 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SPI1 1 dataset
ChIP GM12878 ENCFF134LCP 297 bp overlap
TBL1XR1 1 dataset
ChIP GM12878 ENCFF409FTM 297 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 175 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 229 bp overlap
TCF12 4 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP GM12878 ENCFF506WWB 257 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 211 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 151 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TCF7 1 dataset
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 204 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 255 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 361 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 219 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 265 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 196 bp overlap
YY1 2 datasets
ChIP GM12892 ENCSR000BLT.YY1.GM12892 177 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 226 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap