chr3 : 4,980,934 – 4,981,061
127 bp 89 TFs 2 linked genes
This 127 bp open chromatin element is linked to BHLHE40-AS1 and BHLHE40 and is bound by 89 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BHLHE40-AS1 973 bp At TSS Proximity
BHLHE40 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:4,975,934 – 4,986,061
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR241LIH.AFF1.K-562 104 bp overlap
ChIP K562 ENCFF096RYC 94 bp overlap
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 101 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 88 bp overlap
ARHGAP35 1 dataset
ChIP K562 ENCFF198TWI 103 bp overlap
ARID1A 3 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 127 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 127 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 66 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 64 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 73 bp overlap
BRD3 3 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 83 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 127 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD3.THP-1_iBET-BD2-PMA 127 bp overlap
BRD4 3 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 90 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 78 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 107 bp overlap
BRD9 1 dataset
ChIP Mel270_DMSO GSE124720.BRD9.Mel270_DMSO 91 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 127 bp overlap
CHD1 3 datasets
ChIP GM12878 ENCFF566UBH 127 bp overlap
ChIP IMR-90 ENCFF921SVK 127 bp overlap
ChIP K562 ENCFF118VJV 127 bp overlap
CTCF 16 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 65 bp overlap
ChIP C4-2B ENCFF821XVN 120 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 76 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 114 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 127 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 96 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 62 bp overlap
ChIP RWPE2 ENCFF911IEE 67 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 84 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 56 bp overlap
ChIP astrocyte ENCFF558APA 123 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 57 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 81 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 51 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 89 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 127 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 127 bp overlap
ESR1 1 dataset
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 127 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 127 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 96 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 57 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 127 bp overlap
GATA2 1 dataset
ChIP K562 ENCFF830LLA 127 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 127 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 127 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 127 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 127 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 127 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 127 bp overlap
HMGA2 1 dataset
ChIP A549 ENCFF624CAQ 67 bp overlap
HNRNPUL1 1 dataset
ChIP K562 ENCFF530GTP 127 bp overlap
HOXA7 1 dataset
ChIP A549 ENCFF746ZBJ 64 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 127 bp overlap
ChIP K562 ENCFF771OHZ 127 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 127 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 127 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 127 bp overlap
ChIP liver ENCFF007WWT 80 bp overlap
KAT7 1 dataset
ChIP K562 ENCFF175ZTN 127 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 88 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 77 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 64 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 96 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 88 bp overlap
MED1 2 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 95 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 102 bp overlap
MIER1 1 dataset
ChIP K562 ENCFF584AYC 91 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 127 bp overlap
ChIP K562 ENCFF074XRJ 127 bp overlap
ChIP K562 ENCFF871DSA 64 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 115 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 61 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 127 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 62 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 93 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 127 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 78 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 82 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 63 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 70 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 67 bp overlap
PHB2 1 dataset
ChIP K562 ENCFF772SGA 52 bp overlap
POLR2A 1 dataset
ChIP GM12878 ENCFF412KAE 127 bp overlap
PYGO2 1 dataset
ChIP K562 ENCFF414HHT 127 bp overlap
RBFOX2 4 datasets
ChIP HepG2 ENCFF554DMZ 127 bp overlap
ChIP HepG2 ENCFF939HTZ 127 bp overlap
ChIP K562 ENCFF196WTG 127 bp overlap
ChIP K562 ENCFF967GRF 127 bp overlap
REST 2 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 68 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 127 bp overlap
SAP30 1 dataset
ChIP K-562 ENCSR000AQJ.SAP30.K-562 127 bp overlap
SIN3A 1 dataset
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 75 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 127 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 127 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 127 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 93 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 127 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 127 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 127 bp overlap
SMARCA4 2 datasets
ChIP K562 ENCFF506JCB 127 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 58 bp overlap
SMARCA5 1 dataset
ChIP K562 ENCFF936KHY 106 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 127 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 76 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 110 bp overlap
ChIP K562 ENCFF690CFF 127 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 88 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 50 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 118 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 73 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 58 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 89 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 112 bp overlap
TP53 1 dataset
ChIP GM00011 GSE55727.TP53.GM00011 127 bp overlap
TP63 1 dataset
ChIP A549 ENCFF399JYQ 75 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 62 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 89 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 74 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 127 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 92 bp overlap
YY1 1 dataset
ChIP liver ENCFF515BWJ 82 bp overlap
ZBTB40 2 datasets
ChIP GM12878 ENCFF346DYM 127 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 127 bp overlap
ZBTB49 1 dataset
ChIP K562 ENCFF595DWD 127 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 93 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 52 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF169LZT 127 bp overlap
ZNF18 1 dataset
ChIP HepG2 ENCFF479ZIQ 54 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 54 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 127 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 54 bp overlap
ZNF397 1 dataset
ChIP K-562 ENCSR508EEX.ZNF397.K-562 127 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 127 bp overlap
ZNF609 1 dataset
ChIP K562 ENCFF878VFO 96 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 52 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 82 bp overlap
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