chr20 : 23,356,179 23,356,563
384 bp 95 TFs 4 linked genes
This 384 bp open chromatin element is linked to 4 target genes and is bound by 95 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
LINC01431 1.5 kb Proximal Proximity
NXT1-AS1 4.7 kb Proximal Proximity
NXT1 5.4 kb Proximal Proximity
GZF1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:23,351,179 – 23,361,563
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 348 bp overlap
AGO1 6 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 377 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 377 bp overlap
ChIP HepG2 ENCFF277EOU 384 bp overlap
ChIP HepG2 ENCFF277EOU 384 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 292 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 293 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 384 bp overlap
ChIP HepG2 ENCFF773YDL 384 bp overlap
AKAP8L 1 dataset
ChIP HepG2 ENCFF244QDL 363 bp overlap
AR 6 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 228 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 200 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 157 bp overlap
ChIP VCaP GSE92347.AR.VCaP 130 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 323 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 240 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 384 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 246 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 204 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 221 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 245 bp overlap
BRD4 7 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 187 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 259 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 202 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 239 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 286 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 300 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 328 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 209 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 384 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 104 bp overlap
CSNK2A1 1 dataset
ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 219 bp overlap
CTCF 15 datasets
ChIP GM23338 ENCFF531QOI 112 bp overlap
ChIP GM23338 ENCFF772DML 57 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 78 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 159 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 164 bp overlap
ChIP endodermal cell ENCFF471YCZ 211 bp overlap
ChIP endodermal cell ENCFF471YCZ 121 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 172 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 150 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 218 bp overlap
ChIP neural progenitor cell ENCFF420RBO 298 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 186 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 139 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 200 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 174 bp overlap
ESR1 3 datasets
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 185 bp overlap
ChIP T-47D-B_E2 GSE80358.ESR1.T-47D-B_E2 171 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 138 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 145 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 151 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 371 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 138 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 142 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 328 bp overlap
HIVEP1 2 datasets
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 272 bp overlap
ChIP HepG2 ENCFF063BCC 384 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 352 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 292 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 251 bp overlap
ChIP HepG2 ENCFF671UYF 384 bp overlap
ChIP HepG2 ENCFF684GAM 384 bp overlap
HOXA7 2 datasets
ChIP A549 ENCFF746ZBJ 302 bp overlap
ChIP A549 ENCFF746ZBJ 210 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 384 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 360 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 248 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 297 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 250 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 287 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 288 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 237 bp overlap
MXD1 1 dataset
ChIP HepG2 ENCFF717MYN 384 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 176 bp overlap
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 222 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 266 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 258 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 169 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 199 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 199 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 200 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 148 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 95 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 384 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 349 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 256 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 365 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 162 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 214 bp overlap
POLR2A 13 datasets
ChIP GM12878 ENCFF412KAE 367 bp overlap
ChIP GM12878 ENCFF521FXC 381 bp overlap
ChIP GM12891 ENCFF379FCI 384 bp overlap
ChIP GM12892 ENCFF245LYF 384 bp overlap
ChIP H1 ENCFF833NJP 340 bp overlap
ChIP HepG2 ENCFF252NAR 50 bp overlap
ChIP HepG2 ENCFF422YUC 384 bp overlap
ChIP HepG2 ENCFF718XAJ 376 bp overlap
ChIP IMR-90 ENCFF672YWV 384 bp overlap
ChIP K562 ENCFF215CWW 369 bp overlap
ChIP adrenal gland ENCFF843OBJ 325 bp overlap
ChIP spleen ENCFF446ZGT 361 bp overlap
ChIP spleen ENCFF706IUS 348 bp overlap
POLR2G 3 datasets
ChIP HepG2 ENCFF241AEG 384 bp overlap
ChIP K562 ENCFF047BLG 384 bp overlap
ChIP K562 ENCFF648YPL 384 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 274 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 312 bp overlap
POU5F1 2 datasets
ChIP SKM-1 GSE93706.POU5F1.SKM-1 184 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 269 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 261 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 232 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 224 bp overlap
ChIP H1 ENCFF967OJF 227 bp overlap
RBFOX2 6 datasets
ChIP HepG2 ENCFF554DMZ 384 bp overlap
ChIP HepG2 ENCFF939HTZ 384 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 384 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 384 bp overlap
ChIP K562 ENCFF196WTG 384 bp overlap
ChIP K562 ENCFF967GRF 384 bp overlap
RBM22 5 datasets
ChIP HepG2 ENCFF292RVQ 326 bp overlap
ChIP HepG2 ENCFF292RVQ 271 bp overlap
ChIP HepG2 ENCFF561IAJ 252 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 331 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 324 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 332 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 294 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 343 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 305 bp overlap
SMAD3 3 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 124 bp overlap
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 146 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 373 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 256 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 207 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 305 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 259 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 295 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 245 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 228 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 372 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 166 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 123 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 301 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 311 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 344 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 384 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 345 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 129 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 266 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF15 3 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 298 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 295 bp overlap
ChIP K-562 ENCSR047LSJ.TAF15.K-562 202 bp overlap
TARDBP 3 datasets
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF132LKJ 374 bp overlap
ChIP HepG2 ENCFF609NMG 384 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 148 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 329 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 357 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 384 bp overlap
ZNF141 1 dataset
ChIP HEK293T GSE78099.ZNF141.HEK293T 159 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 148 bp overlap
ZNF280B 1 dataset
ChIP HepG2 ENCFF084BYB 384 bp overlap
ZNF576 1 dataset
ChIP HepG2 ENCFF157BAG 384 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 384 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 131 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 384 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap