chr17 : 57,876,029 57,876,327
298 bp 98 TFs 1 linked gene
This 298 bp open chromatin element is linked to CUEDC1 and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CUEDC1 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:57,871,029 – 57,881,327
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 298 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 127 bp overlap
ARID1A 3 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 249 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 298 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 173 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 259 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 298 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 298 bp overlap
BRD2 2 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 102 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 226 bp overlap
BRD3 2 datasets
ChIP A-549 GSE119863.BRD3.A-549 152 bp overlap
ChIP LPS141 GSE111253.BRD3.LPS141 191 bp overlap
BRD4 14 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 298 bp overlap
ChIP HCT-116 GSE73319.BRD4.HCT-116 298 bp overlap
ChIP HCT-116 GSE57628.BRD4.HCT-116 146 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 298 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 298 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 101 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 212 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 185 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 263 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 166 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 220 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 126 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 63 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 298 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 195 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 167 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCFF772ZTQ 63 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 209 bp overlap
CTCF 16 datasets
ChIP GM23338 ENCFF832KWE 100 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 243 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 298 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 211 bp overlap
ChIP KMS-11 ENCFF853JKX 87 bp overlap
ChIP brain ENCFF067KUH 95 bp overlap
ChIP brain ENCFF099ASU 119 bp overlap
ChIP brain ENCFF685VRG 159 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 53 bp overlap
ChIP chondrocyte ENCFF134ORZ 53 bp overlap
ChIP endothelial cell ENCFF663LIE 98 bp overlap
ChIP heart right ventricle ENCFF163IJK 85 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 61 bp overlap
ChIP nephron ENCFF972IQB 54 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 72 bp overlap
ChIP upper lobe of left lung ENCFF170ORD 58 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 212 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 262 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 292 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 298 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 172 bp overlap
ESR1 11 datasets
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 298 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 225 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 240 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 222 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 187 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 127 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 99 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 251 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 295 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 77 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 99 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 198 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 242 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 231 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 298 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 298 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 298 bp overlap
GLIS2 4 datasets
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 277 bp overlap
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 298 bp overlap
ChIP HEK293 ENCFF446EIF 298 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 289 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 117 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 207 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 148 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 146 bp overlap
JUN 4 datasets
ChIP A549 ENCFF191QZG 56 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 298 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 166 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 298 bp overlap
KAT7 2 datasets
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 298 bp overlap
ChIP WTC11 ENCFF581TPB 298 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 50 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 137 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 195 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 298 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 158 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 298 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 70 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 298 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 298 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 298 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 298 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 127 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 113 bp overlap
MTERF4 2 datasets
ChIP HepG2 ENCFF831NAM 135 bp overlap
ChIP HepG2 ENCFF831NAM 298 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 115 bp overlap
MYC 4 datasets
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 54 bp overlap
ChIP GP5D GSE51234.MYC.GP5D 88 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 126 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 78 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 191 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 147 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 279 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 265 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 183 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 99 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 266 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 212 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 145 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 298 bp overlap
NR0B2 1 dataset
ChIP HepG2 ENCFF071MVY 100 bp overlap
NRL 1 dataset
ChIP HepG2 ENCFF528PUT 226 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 155 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 267 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 183 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 227 bp overlap
PHF8 2 datasets
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 137 bp overlap
ChIP HepG2 ENCFF065NWR 220 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 271 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 298 bp overlap
POLR2A 2 datasets
ChIP MCF-7 ENCFF309IKZ 115 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 262 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 298 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 298 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 155 bp overlap
RAD21 3 datasets
ChIP GP5D GSE51234.RAD21.GP5D 60 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 298 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 84 bp overlap
REST 1 dataset
ChIP GM23338 ENCFF024TCL 190 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 285 bp overlap
SIX4 1 dataset
ChIP HepG2 ENCFF372NPG 105 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 298 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 298 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 297 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 298 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 295 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 258 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 193 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 110 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 298 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 298 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 184 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 298 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 217 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 196 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 298 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 298 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 237 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 76 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 227 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 81 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 284 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 256 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 188 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 188 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 298 bp overlap
TCF7L2 9 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 260 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 229 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 273 bp overlap
ChIP HCT116 ENCFF038POZ 217 bp overlap
ChIP HCT116 ENCFF038POZ 64 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 298 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 298 bp overlap
ChIP Panc1 ENCFF829HHL 90 bp overlap
ChIP Panc1 ENCFF829HHL 288 bp overlap
TEAD4 3 datasets
ChIP Ishikawa ENCFF772OTG 182 bp overlap
ChIP Ishikawa ENCFF772OTG 208 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 164 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 201 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 256 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 123 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 171 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 168 bp overlap
ZFX 4 datasets
ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 278 bp overlap
ChIP HCT-116 GSE102616.ZFX.HCT-116 278 bp overlap
ChIP HCT116 ENCFF324IZY 298 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 298 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 261 bp overlap
ChIP HEK293 ENCFF033NQQ 298 bp overlap
ZIC5 2 datasets
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 202 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 213 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 120 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 112 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 63 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 173 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 133 bp overlap
ZNF423 3 datasets
ChIP HEK293 ENCFF937QHI 261 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 162 bp overlap
ChIP WTC11 ENCFF574PBR 216 bp overlap
ZNF574 1 dataset
ChIP HepG2 ENCFF206MMY 246 bp overlap
ZNF619 1 dataset
ChIP HepG2 ENCFF388NNO 149 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 190 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 282 bp overlap
ZNF761 1 dataset
ChIP HepG2 ENCFF761IOF 62 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 147 bp overlap