chr1 : 241,191,865 241,192,160
295 bp 88 TFs 0 linked genes
This 295 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:241,186,865 – 241,197,160
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1 GSE85558.AR.22Rv1 274 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 184 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 295 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 286 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 183 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 189 bp overlap
ATF3 4 datasets
ChIP liver ENCFF375GID 249 bp overlap
ChIP liver ENCFF867MFZ 295 bp overlap
ChIP liver ENCFF867MFZ 85 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 295 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 166 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 117 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 147 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 151 bp overlap
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 241 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 151 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 272 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 192 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 237 bp overlap
CREBBP 1 dataset
ChIP LS180 GSE39277.CREBBP.LS180 196 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 228 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 148 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 191 bp overlap
EGR1 2 datasets
ChIP liver ENCFF130MBW 295 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 295 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 162 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 4 datasets
ChIP LS180 GSE140533.FOXA1.LS180 295 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 249 bp overlap
ChIP liver ERP002306.FOXA1.liver 233 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 229 bp overlap
FOXA2 8 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 276 bp overlap
ChIP liver ENCFF877SFI 197 bp overlap
ChIP liver ENCFF888VJF 172 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 295 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 266 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 295 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 160 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 192 bp overlap
GABPA 3 datasets
ChIP liver ENCFF500III 295 bp overlap
ChIP liver ENCSR038GMB.GABPA.liver 213 bp overlap
ChIP liver ENCSR350ORK.GABPA.liver 132 bp overlap
GATA4 4 datasets
ChIP YCC-3 GSE51705.GATA4.YCC-3 295 bp overlap
ChIP foregut GSE117136.GATA4.foregut 295 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 295 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 295 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 295 bp overlap
ChIP AGS GSE51936.GATA6.AGS 148 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 89 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 295 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 249 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 193 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 295 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 295 bp overlap
ChIP foregut GSE117136.GATA6.foregut 295 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 295 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 295 bp overlap
GFI1 2 datasets
ChIP Hep-G2 ENCSR849FVL.GFI1.Hep-G2 256 bp overlap
ChIP HepG2 ENCFF472INF 201 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 140 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 257 bp overlap
HNF4A 16 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 290 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 295 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 295 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 273 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 254 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF146SSF 188 bp overlap
ChIP HepG2 ENCFF669NAM 82 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 295 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 295 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 295 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 262 bp overlap
ChIP liver ENCFF354NRH 295 bp overlap
ChIP liver ENCFF449HPV 295 bp overlap
ChIP liver ERP002306.HNF4A.liver 295 bp overlap
HNF4G 4 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 207 bp overlap
ChIP HepG2 ENCFF323ATZ 287 bp overlap
ChIP liver ENCFF170YNZ 187 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 273 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 128 bp overlap
JUND 5 datasets
ChIP liver ENCFF007WWT 295 bp overlap
ChIP liver ENCFF007WWT 134 bp overlap
ChIP liver ENCFF557PGE 295 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 295 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 274 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 295 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 147 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 295 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 295 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 146 bp overlap
MAX 4 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 255 bp overlap
ChIP liver ENCFF584QGB 264 bp overlap
ChIP liver ENCSR521IID.MAX.liver 295 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 247 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 207 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 216 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 162 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 86 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 212 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NCOR1 2 datasets
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 247 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 90 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 229 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 205 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF565JGD 295 bp overlap
ChIP liver ENCFF565JGD 117 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 295 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 257 bp overlap
NR2F6 1 dataset
ChIP HepG2 ENCFF514UJI 295 bp overlap
ONECUT1 2 datasets
ChIP liver ERP002306.ONECUT1.liver 157 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 113 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 144 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 209 bp overlap
POLR2A 3 datasets
ChIP stomach ENCFF607ZPU 295 bp overlap
ChIP stomach ENCFF820WZN 202 bp overlap
ChIP transverse colon ENCFF610RWV 295 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 295 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 170 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 226 bp overlap
ChIP liver ENCFF522JHE 200 bp overlap
REST 8 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 280 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 162 bp overlap
ChIP liver ENCFF240FWT 295 bp overlap
ChIP liver ENCFF240FWT 146 bp overlap
ChIP liver ENCFF577AZT 295 bp overlap
ChIP liver ENCFF577AZT 98 bp overlap
ChIP liver ENCSR893QWP.REST.liver 295 bp overlap
ChIP liver ENCSR867WPH.REST.liver 295 bp overlap
RXRA 3 datasets
ChIP liver ENCFF077DAP 176 bp overlap
ChIP liver ENCFF807CIA 290 bp overlap
ChIP liver ENCFF807CIA 60 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 295 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 150 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 163 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 231 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 231 bp overlap
ChIP HepG2 ENCFF767OCK 295 bp overlap
SP1 4 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 229 bp overlap
ChIP liver ENCFF597LFJ 295 bp overlap
ChIP liver ENCFF769YSM 295 bp overlap
ChIP liver ENCFF769YSM 295 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 143 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 161 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 202 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 134 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 87 bp overlap
YY1 4 datasets
ChIP liver ENCFF400MBC 295 bp overlap
ChIP liver ENCFF515BWJ 295 bp overlap
ChIP liver ENCFF515BWJ 220 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 256 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 295 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 295 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 288 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 131 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 159 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 295 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 155 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 295 bp overlap
ZNF792 1 dataset
ChIP HepG2 ENCFF825WPU 295 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 82 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap