chr16 : 12,903,052 12,903,314
262 bp 85 TFs 1 linked gene
This 262 bp open chromatin element is linked to SHISA9 and is bound by 85 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SHISA9 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:12,898,052 – 12,908,314
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 253 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 262 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 240 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 262 bp overlap
ChIP H1 ENCFF399KAM 262 bp overlap
Ahr::Arnt 2 datasets
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 195 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 197 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 262 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 262 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 110 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 102 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 262 bp overlap
CTCF 1 dataset
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 50 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 150 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 79 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 262 bp overlap
ChIP MCF-7 ENCFF692OYJ 262 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 262 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 125 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 165 bp overlap
ESR1 3 datasets
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 50 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 113 bp overlap
ChIP MCF-7_Veh GSE117941.ESR1.MCF-7_Veh 127 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 166 bp overlap
EZH2 35 datasets
ChIP A673 ENCFF790MVL 157 bp overlap
ChIP A673 ENCFF790MVL 262 bp overlap
ChIP A673 ENCFF790MVL 221 bp overlap
ChIP A673 ENCFF955JRZ 157 bp overlap
ChIP A673 ENCFF955JRZ 262 bp overlap
ChIP GM23248 ENCFF404ZHM 165 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 181 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 175 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 241 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 262 bp overlap
ChIP PC-3 ENCFF855OUB 186 bp overlap
ChIP PC-3 ENCFF855OUB 262 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 120 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 197 bp overlap
ChIP T98G GSE112240.EZH2.T98G 262 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 240 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 224 bp overlap
ChIP astrocyte ENCFF365JTP 151 bp overlap
ChIP astrocyte ENCFF365JTP 262 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 262 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 148 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 75 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 118 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 262 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 262 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 150 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 262 bp overlap
ChIP keratinocyte ENCFF070STK 62 bp overlap
ChIP keratinocyte ENCFF070STK 262 bp overlap
ChIP keratinocyte ENCFF070STK 262 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 204 bp overlap
ChIP neural progenitor cell ENCFF472NFV 90 bp overlap
ChIP neural progenitor cell ENCFF472NFV 262 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 95 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 108 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 210 bp overlap
HDAC2 3 datasets
ChIP MCF-7 ENCFF881POI 61 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 203 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 262 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 145 bp overlap
HMGXB4 2 datasets
ChIP WTC11 ENCFF962POR 262 bp overlap
ChIP WTC11 ENCFF962POR 262 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 148 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 140 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 262 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 261 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 90 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 133 bp overlap
ChIP H1 ENCFF078LED 194 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 73 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 262 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 188 bp overlap
ChIP MCF-7 ENCSR288IJC.MAZ.MCF-7 113 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 90 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 75 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 117 bp overlap
MSANTD3 2 datasets
Motif DE_24h DE_24h-MSANTD3_MA1523.2 7 bp overlap
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
MTF1 2 datasets
Motif DE_24h DE_24h-MTF1_MA0863.1 14 bp overlap
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 262 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 96 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 110 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 138 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 124 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 119 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 218 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF447SRJ 262 bp overlap
ChIP HepG2 ENCFF447SRJ 135 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 56 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 214 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 108 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 262 bp overlap
ChIP neural cell ENCFF604SPB 215 bp overlap
ChIP sigmoid colon ENCFF748YVT 262 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 171 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 262 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 79 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 262 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 262 bp overlap
RAD21 3 datasets
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 152 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 262 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 262 bp overlap
RARA::RXRG 2 datasets
Motif DE_24h DE_24h-RARARXRG_MA1149.2 17 bp overlap
Motif ES_0h ES_0h-RARARXRG_MA1149.2 17 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 262 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 233 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 207 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 256 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 127 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 84 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 227 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 257 bp overlap
SIN3A 3 datasets
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 262 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 262 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 206 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 205 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 127 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 54 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 177 bp overlap
SMARCD3 1 dataset
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 162 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 120 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 173 bp overlap
SP5 3 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 262 bp overlap
SRSF1 1 dataset
ChIP HepG2 ENCFF666RVW 262 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 67 bp overlap
STAG1 3 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 127 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 121 bp overlap
SUZ12 4 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 262 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 215 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 262 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 194 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 262 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 157 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 229 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 143 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 81 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 258 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 94 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 88 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 262 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 262 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 204 bp overlap
ZNF444 2 datasets
ChIP MCF-7 ENCFF602QFR 237 bp overlap
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 80 bp overlap
ZNF460 2 datasets
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 170 bp overlap