chr15 : 26,967,711 26,968,303
592 bp 112 TFs 1 linked gene
This 592 bp open chromatin element is linked to GABRG3 and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GABRG3 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:26,962,711 – 26,973,303
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 226 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 457 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 246 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 592 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 489 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 202 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 188 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 251 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 196 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 563 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 578 bp overlap
BRCA1 2 datasets
ChIP H1 ENCFF288NOI 301 bp overlap
ChIP WA01 ENCSR000EBX.BRCA1.WA01 238 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 211 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 277 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 504 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 468 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 363 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 286 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 224 bp overlap
CHD2 3 datasets
ChIP H1 ENCFF991MKH 310 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 126 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 454 bp overlap
CREB1 2 datasets
ChIP WA01 ENCSR000BSN.CREB1.WA01 94 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 214 bp overlap
CTCF 6 datasets
ChIP NB69 GSE101295.CTCF.NB69 180 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 534 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 168 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 225 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 282 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 459 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 242 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 260 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 498 bp overlap
E2F8 1 dataset
Motif DE_60h DE_60h-E2F8_MA0865.3 9 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 166 bp overlap
ERG 3 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 269 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 228 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 317 bp overlap
EZH2 6 datasets
ChIP H1 ENCFF232NZA 592 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 538 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 417 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 468 bp overlap
ChIP neural progenitor cell ENCFF472NFV 515 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 278 bp overlap
FEZF2 2 datasets
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 337 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 464 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 184 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 349 bp overlap
HDAC2 2 datasets
ChIP VCaP_DHAT_2H GSE28950.HDAC2.VCaP_DHAT_2H 156 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 366 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 288 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 148 bp overlap
IRF7 2 datasets
Motif DE_60h DE_60h-IRF7_MA0772.2 13 bp overlap
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
Irf1 3 datasets
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 339 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 551 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 583 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 279 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 171 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 226 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 566 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 213 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 344 bp overlap
KLF15 2 datasets
Motif DE_60h DE_60h-KLF15_MA1513.2 8 bp overlap
Motif DE_72h DE_72h-KLF15_MA1513.2 8 bp overlap
MAX 2 datasets
ChIP WTC11 ENCFF223QFY 473 bp overlap
ChIP WTC11 ENCFF223QFY 504 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 234 bp overlap
MYC 1 dataset
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 100 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 248 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 269 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 232 bp overlap
NR1I2 3 datasets
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
Motif DE_60h DE_60h-NR1I2_MA1533.2 15 bp overlap
Motif DE_72h DE_72h-NR1I2_MA1533.2 15 bp overlap
NR2C1 3 datasets
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 461 bp overlap
NRF1 13 datasets
ChIP H1 ENCFF582PEJ 149 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 108 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 264 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 267 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 102 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 246 bp overlap
ChIP K562 ENCFF130SGK 219 bp overlap
ChIP K562 ENCFF689EWI 275 bp overlap
ChIP K562 ENCFF791UHF 236 bp overlap
ChIP SK-N-SH ENCFF820YTU 216 bp overlap
ChIP SK-N-SH ENCSR000EHZ.NRF1.SK-N-SH 181 bp overlap
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 250 bp overlap
ChIP WA01 ENCSR000ECC.NRF1.WA01 206 bp overlap
Nr1H2 3 datasets
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nrf1 3 datasets
Motif DE_48h DE_48h-Nrf1_MA0506.3 12 bp overlap
Motif DE_60h DE_60h-Nrf1_MA0506.3 12 bp overlap
Motif DE_72h DE_72h-Nrf1_MA0506.3 12 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 592 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 366 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 592 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 531 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 474 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 405 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP H1 ENCFF566JSR 304 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 320 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 510 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 287 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 432 bp overlap
PRDM1 2 datasets
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
PROX1 2 datasets
Motif DE_60h DE_60h-PROX1_MA0794.1 12 bp overlap
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 410 bp overlap
REST 2 datasets
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 247 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 219 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 372 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 331 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 394 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 267 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 286 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 472 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 211 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 335 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 387 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 250 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 302 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 409 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 136 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 210 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 361 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 174 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 219 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 362 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 271 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 364 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 323 bp overlap
SUZ12 9 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 444 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 538 bp overlap
ChIP H1 ENCFF881NFR 515 bp overlap
ChIP H1 ENCFF881NFR 592 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 295 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 221 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 487 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 446 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
Stat6 1 dataset
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 194 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 576 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 196 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 369 bp overlap
ChIP hESC GSE122298.TBP.hESC 357 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 234 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 289 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 221 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 111 bp overlap
TFAP2C 2 datasets
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
TFDP1 1 dataset
Motif DE_60h DE_60h-TFDP1_MA1122.2 8 bp overlap
THRA 2 datasets
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 537 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 293 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 378 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 209 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 336 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 500 bp overlap
Yy1 2 datasets
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZBTB24 2 datasets
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
ZBTB33 1 dataset
Motif DE_60h DE_60h-ZBTB33_MA0527.2 10 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 362 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 440 bp overlap
ZNF135 2 datasets
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF184 4 datasets
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ChIP WTC11 ENCFF352POG 436 bp overlap
ZNF343 2 datasets
Motif DE_60h DE_60h-ZNF343_MA1711.2 16 bp overlap
Motif DE_72h DE_72h-ZNF343_MA1711.2 16 bp overlap
ZNF454 1 dataset
Motif DE_60h DE_60h-ZNF454_MA1712.2 17 bp overlap
ZNF460 2 datasets
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF770 2 datasets
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap