chr14 : 88,364,579 88,365,430
851 bp 118 TFs 3 linked genes
This 851 bp open chromatin element is linked to SPATA7, PTPN21, and ZC3H14 and is bound by 118 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SPATA7 20.8 kb Distal Multiome
PTPN21 190.0 kb Distal Multiome
ZC3H14 198.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:88,359,579 – 88,370,430
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif ES_0h ES_0h-ARNT2_MA1464.2 8 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 302 bp overlap
ChIP H1 ENCFF399KAM 713 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 818 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 215 bp overlap
Arid3b 1 dataset
Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap
Arnt 1 dataset
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif ES_0h ES_0h-Arntl_MA0603.2 8 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 247 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP H1 ENCFF126NLU 528 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 209 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 355 bp overlap
CTCF 1 dataset
ChIP C4-2B ENCFF821XVN 227 bp overlap
DMRTC2 1 dataset
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 150 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 234 bp overlap
FLI1::FOXI1 2 datasets
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HES1 1 dataset
Motif ES_0h ES_0h-HES1_MA1099.3 8 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 330 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF17 2 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MAX 3 datasets
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 198 bp overlap
ChIP WTC11 ENCFF223QFY 402 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 8 datasets
ChIP 501-mel GSE137522.MITF.501-mel 512 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 226 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 504 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 502 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 363 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 410 bp overlap
ChIP K562 ENCFF731XJJ 210 bp overlap
MLX 1 dataset
Motif ES_0h ES_0h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif ES_0h ES_0h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 307 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 497 bp overlap
Mlxip 1 dataset
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 133 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 814 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 542 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 640 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 561 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 604 bp overlap
ChIP hESC GSE20650.NANOG.hESC 175 bp overlap
ChIP hESC GSE18292.NANOG.hESC 104 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2C2 1 dataset
ChIP WTC11 ENCFF896ODS 371 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 266 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 230 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 198 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 760 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 624 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 196 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 246 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 215 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 127 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 492 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 680 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 243 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 215 bp overlap
PRDM1 1 dataset
ChIP HeLa-S3 ENCFF893HDJ 265 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD51 7 datasets
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 384 bp overlap
ChIP Hep-G2 ENCSR081WLS.RAD51.Hep-G2 317 bp overlap
ChIP HepG2 ENCFF188FEZ 365 bp overlap
ChIP K-562 ENCSR524BUE.RAD51.K-562 260 bp overlap
ChIP K562 ENCFF133ELP 405 bp overlap
ChIP MCF-7 ENCFF128SEB 397 bp overlap
ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 294 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 601 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 157 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RREB1 2 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 254 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 184 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 227 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 248 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 274 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 413 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 468 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 319 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 336 bp overlap
ChIP hESC GSE18292.SOX2.hESC 100 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
SP1 4 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 216 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TFE3 2 datasets
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 100 bp overlap
TFEB 1 dataset
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif ES_0h ES_0h-TFEC_MA0871.3 8 bp overlap
TOE1 2 datasets
ChIP HepG2 ENCFF776YJH 305 bp overlap
ChIP MCF-7 ENCFF544WQF 227 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 537 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 175 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
USF1 8 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 210 bp overlap
ChIP H1 ENCFF090WVU 119 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 167 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 353 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 5 datasets
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 283 bp overlap
ChIP IMR-90 ENCFF438KUN 257 bp overlap
ChIP K562 ENCFF306QPU 537 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 522 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 254 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap