chr1 : 228,064,209 228,065,121
912 bp 123 TFs 0 linked genes
This 912 bp open chromatin element has no linked target genes and is bound by 123 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:228,059,209 – 228,070,121
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AR 5 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 208 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 264 bp overlap
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 203 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 273 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 253 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 105 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 271 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 79 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 323 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 201 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CTCF 1 dataset
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
CTCFL 1 dataset
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 331 bp overlap
EHF 1 dataset
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ESR1 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 84 bp overlap
ETV7 1 dataset
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
EZH2 1 dataset
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 301 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 669 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 387 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 669 bp overlap
GLIS1 3 datasets
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
ChIP HEK293 ENCFF299RSE 337 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 565 bp overlap
GLIS2 2 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 249 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 374 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 380 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 327 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 263 bp overlap
JUN 4 datasets
ChIP 786-O GSE86092.JUN.786-O 243 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 411 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 777 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 912 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 180 bp overlap
KLF1 2 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF13 2 datasets
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF16 3 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MAZ 2 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Mecom 1 dataset
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 159 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_24h DE_24h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 689 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 377 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 362 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 354 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 336 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 640 bp overlap
PLAGL2 1 dataset
Motif DE_24h DE_24h-PLAGL2_MA1548.2 8 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 590 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 800 bp overlap
Prdm15 1 dataset
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
RARB 1 dataset
Motif DE_24h DE_24h-RARB_MA1552.2 13 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 314 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 235 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 338 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 368 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 912 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 912 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 517 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 595 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 912 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 251 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 382 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 285 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 212 bp overlap
SP5 2 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 537 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 234 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 246 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 364 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 234 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 330 bp overlap
TAF15 1 dataset
ChIP K-562 ENCSR047LSJ.TAF15.K-562 262 bp overlap
TBP 1 dataset
Motif DE_24h DE_24h-TBP_MA0108.3 7 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TBXT 1 dataset
Motif DE_24h DE_24h-TBXT_MA0009.2 16 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF7L2 1 dataset
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 6 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 341 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 269 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 398 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 284 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB24 1 dataset
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 326 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
Motif DE_24h DE_24h-ZNF143_MA0088.2 16 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF263 2 datasets
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 110 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 613 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF454 1 dataset
Motif DE_24h DE_24h-ZNF454_MA1712.2 17 bp overlap
ZNF528 2 datasets
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ChIP HEK293 GSE76494.ZNF528.HEK293 64 bp overlap
ZNF558 1 dataset
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF682 1 dataset
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
ZNF684 1 dataset
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
ZNF692 1 dataset
Motif DE_24h DE_24h-ZNF692_MA1986.2 8 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 409 bp overlap
ZNF740 2 datasets
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Zfp335 1 dataset
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap