chr13 : 30,863,223 – 30,863,566
343 bp 100 TFs 1 linked gene
This 343 bp open chromatin element is linked to LINC00398 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00398 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:30,858,223 – 30,868,566
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 304 bp overlap
AR 7 datasets
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 133 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 73 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 85 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 66 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 139 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 343 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 343 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 67 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 177 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 343 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 325 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 343 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 343 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 343 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 206 bp overlap
BRD4 4 datasets
ChIP LPS141 GSE111253.BRD4.LPS141 326 bp overlap
ChIP hESC GSE33281.BRD4.hESC 80 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 228 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 310 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 343 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 104 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 3 datasets
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP brain ENCFF163BBN 99 bp overlap
ChIP chondrocyte ENCFF134ORZ 121 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 327 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 343 bp overlap
ELK1::HOXA1 1 dataset
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 337 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 210 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 236 bp overlap
ETV5::DRGX 1 dataset
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 343 bp overlap
FEZF2 3 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 54 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 286 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 242 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 144 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 231 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 343 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 226 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 177 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 123 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 343 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 343 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 343 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 339 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 229 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 170 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 343 bp overlap
ChIP H1 ENCFF078LED 82 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 173 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 250 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
KLF7 1 dataset
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
KLF9 2 datasets
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 144 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 123 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
ChIP WTC11 ENCFF223QFY 343 bp overlap
ChIP WTC11 ENCFF223QFY 190 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 134 bp overlap
MED12 1 dataset
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 174 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 343 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 298 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 200 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 343 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 290 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 256 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 123 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 343 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 61 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 300 bp overlap
ChIP H1 ENCFF427UFV 66 bp overlap
PLAGL2 1 dataset
Motif ES_0h ES_0h-PLAGL2_MA1548.2 8 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 277 bp overlap
ChIP H1 ENCFF566JSR 207 bp overlap
ChIP H1 ENCFF833NJP 191 bp overlap
ChIP vagina ENCFF384GAB 109 bp overlap
ChIP vagina ENCFF384GAB 313 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 11 datasets
ChIP BG03 GSE21614.POU5F1.BG03 307 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 343 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 299 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 343 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 218 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 142 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 166 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 224 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 264 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 225 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 220 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 343 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 294 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 251 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 188 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 228 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 281 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 343 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 106 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 317 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 141 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 116 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 302 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 262 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 167 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 269 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 150 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 334 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 104 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap
SP1 3 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 285 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 331 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 167 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 343 bp overlap
ChIP H1 ENCFF478SZO 134 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 343 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 228 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 230 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 219 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 134 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 229 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 234 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 242 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 343 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 343 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 177 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 119 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 160 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 138 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 236 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF211 2 datasets
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
Motif ES_0h ES_0h-ZNF211_MA1974.2 10 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 187 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 1 dataset
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact