chr12 : 106,254,770 – 106,255,094
324 bp 93 TFs 1 linked gene
This 324 bp open chromatin element is linked to CKAP4 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CKAP4 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:106,249,770 – 106,260,094
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 128 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 241 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 163 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 93 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 139 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 230 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 324 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 292 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 324 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 324 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 181 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 232 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 178 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 162 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 308 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 112 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 243 bp overlap
ESR1 35 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 319 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 324 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 296 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 324 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 324 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 324 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 324 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 324 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 211 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 324 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 264 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 324 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 324 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 324 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 324 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 324 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 324 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 324 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 324 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 324 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 230 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 251 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 324 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 324 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 324 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 324 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 324 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 324 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 311 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 301 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 321 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 294 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 300 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 223 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 250 bp overlap
ESR2 1 dataset
ChIP MCF-7_C412_E2 GSE48096.ESR2.MCF-7_C412_E2 110 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 219 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 278 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 173 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 213 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 324 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 324 bp overlap
GLIS2 3 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
ChIP HEK293 ENCFF446EIF 324 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 261 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 282 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 224 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 324 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 324 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 301 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 235 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 324 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 324 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 240 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 324 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 297 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 324 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 324 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 203 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 179 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 251 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 129 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 146 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 208 bp overlap
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 103 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 244 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 324 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 302 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 324 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 324 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 324 bp overlap
ChIP hESC GSE18292.NANOG.hESC 177 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 324 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 285 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 248 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 222 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 149 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 324 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 302 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 166 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 244 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 324 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 163 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 257 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 215 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 245 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 99 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 52 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 322 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 299 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 231 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 324 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 242 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 207 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 313 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 324 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 254 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 206 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 281 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 256 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 229 bp overlap
ChIP HEK293 ENCFF733RBE 194 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 324 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 310 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 157 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 237 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 118 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 77 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 216 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 222 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 324 bp overlap
ChIP HCT116 ENCFF038POZ 147 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 324 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 245 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 279 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 254 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 324 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 261 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 301 bp overlap
YY1 5 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 324 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 324 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 102 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 110 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 276 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 324 bp overlap
ZBTB21 2 datasets
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 182 bp overlap
ChIP Hep-G2 ENCSR549PAU.ZBTB21.Hep-G2 170 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 196 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 190 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 266 bp overlap
ChIP HEK293 ENCFF033NQQ 282 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 5 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 257 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 274 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 320 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 251 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 309 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 148 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 144 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 85 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 324 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 169 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 324 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 324 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 294 bp overlap
ZNF501 1 dataset
ChIP HEK293 ENCSR461ZJT.ZNF501.HEK293 204 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 172 bp overlap
ZNF558 1 dataset
ChIP HEK293 ENCSR447ZTA.ZNF558.HEK293 299 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 324 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 268 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 324 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 181 bp overlap
ZNF692 3 datasets
ChIP HEK293 ENCFF040AZE 324 bp overlap
ChIP HEK293 ENCFF040AZE 271 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 324 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 175 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 236 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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