chr11 : 125,166,402 125,167,041
639 bp 95 TFs 2 linked genes
This 639 bp open chromatin element is linked to PKNOX2 and PKNOX2-DT and is bound by 95 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PKNOX2 1.7 kb Proximal Proximity
PKNOX2-DT 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:125,161,402 – 125,172,041
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 192 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 284 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 564 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 330 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 624 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 256 bp overlap
BRD2 2 datasets
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 155 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 332 bp overlap
BRD4 8 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 182 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 222 bp overlap
ChIP COLO-320 GSE73319.BRD4.COLO-320 635 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 436 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 203 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 167 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 394 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 306 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 336 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 395 bp overlap
CDK8 1 dataset
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 58 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 376 bp overlap
CTCF 1 dataset
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 292 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 222 bp overlap
EED 3 datasets
ChIP ProEs GSE59087.EED.ProEs 136 bp overlap
ChIP ProEs GSE59087.EED.ProEs 218 bp overlap
ChIP ProEs GSE59087.EED.ProEs 122 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 337 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 277 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 202 bp overlap
ESR1 2 datasets
ChIP T-47D-B GSE80358.ESR1.T-47D-B 93 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 119 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 339 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 235 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 233 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 220 bp overlap
EZH2 25 datasets
ChIP B cell ENCFF803EMO 340 bp overlap
ChIP GM12878 ENCFF635TDF 291 bp overlap
ChIP GM23248 ENCFF404ZHM 94 bp overlap
ChIP GM23248 ENCFF404ZHM 299 bp overlap
ChIP GM23248 ENCFF404ZHM 546 bp overlap
ChIP GM23338 ENCFF613YON 639 bp overlap
ChIP H1 ENCFF232NZA 639 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 607 bp overlap
ChIP astrocyte ENCFF365JTP 156 bp overlap
ChIP astrocyte ENCFF365JTP 400 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 67 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 77 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 122 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 288 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 578 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 639 bp overlap
ChIP fibroblast of lung ENCFF479BAW 390 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 404 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 181 bp overlap
ChIP hESC GSE113817.EZH2.hESC 422 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 182 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 121 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 80 bp overlap
ChIP neural progenitor cell ENCFF018MKA 128 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 639 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 277 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 252 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 269 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 156 bp overlap
GATA2 1 dataset
ChIP ME-1 GSE46044.GATA2.ME-1 238 bp overlap
GLIS3 2 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 365 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 180 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 297 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 417 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 272 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 461 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 466 bp overlap
JARID2 2 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 542 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 267 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 530 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 210 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 175 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 211 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 168 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 166 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 529 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 589 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 416 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 216 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 200 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 639 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 484 bp overlap
ChIP neural cell ENCFF623HQN 510 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 363 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 490 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 270 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 338 bp overlap
NCAPH2 3 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 388 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 398 bp overlap
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 234 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 317 bp overlap
PCBP1 1 dataset
ChIP K-562 GSE120104.PCBP1.K-562 180 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 322 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 224 bp overlap
POLR2A 12 datasets
ChIP body of pancreas ENCFF501FEC 550 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 476 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 513 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 496 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP spleen ENCFF446ZGT 410 bp overlap
ChIP spleen ENCFF706IUS 346 bp overlap
ChIP thyroid gland ENCFF979LRR 225 bp overlap
ChIP tibial nerve ENCFF983HAU 290 bp overlap
ChIP tibial nerve ENCFF983HAU 471 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 405 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 213 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 452 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 639 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 299 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 418 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 639 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 138 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 160 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 196 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 286 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 639 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 639 bp overlap
REST 3 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP neural ENCSR000BTV.REST.neural 177 bp overlap
ChIP neural ENCSR000BTV.REST.neural 160 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 150 bp overlap
ChIP H1 ENCFF239FFS 466 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 309 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 361 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 438 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 328 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 451 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 87 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 244 bp overlap
SIN3A 3 datasets
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 159 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 273 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 338 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 217 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 286 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 466 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 188 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 238 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 277 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 516 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 435 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 328 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 232 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 287 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 282 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 475 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 246 bp overlap
SMC1 2 datasets
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 281 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 81 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 387 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 386 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 360 bp overlap
SUZ12 3 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 209 bp overlap
ChIP H1 ENCFF881NFR 639 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 350 bp overlap
TAF1 3 datasets
ChIP PFSK-1 ENCFF982LZL 412 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 194 bp overlap
ChIP neural cell ENCFF468SPD 522 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 246 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 230 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 617 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 286 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 214 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 186 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 318 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 410 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 348 bp overlap
ZFX 1 dataset
ChIP HEK293T ENCFF402JZW 582 bp overlap
ZNF202 1 dataset
ChIP HEK293T GSE78099.ZNF202.HEK293T 540 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 125 bp overlap
ZNF263 3 datasets
ChIP HEK293T GSE78099.ZNF263.HEK293T 384 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 65 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 175 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 195 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 98 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 231 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 211 bp overlap
ZNF675 1 dataset
ChIP HEK293T GSE78099.ZNF675.HEK293T 275 bp overlap