chr10 : 66,927,933 – 66,928,627
694 bp 106 TFs 1 linked gene
This 694 bp open chromatin element is linked to LRRTM3 and is bound by 106 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LRRTM3 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:66,922,933 – 66,933,627
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 219 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 149 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 322 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 694 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 616 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 3 datasets
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 126 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 331 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 563 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRCA1 1 dataset
ChIP SH-EP_pWZL-MYCNwt GSE111905.BRCA1.SH-EP_pWZL-MYCNwt 95 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 384 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 333 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 549 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 672 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 171 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 238 bp overlap
CREB1 6 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 280 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 284 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 280 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 228 bp overlap
CTCF 46 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 127 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 300 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 242 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 101 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 105 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 338 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 339 bp overlap
ChIP chondrocyte ENCFF134ORZ 506 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 346 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 312 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 291 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 277 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 238 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF087VBI 431 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 366 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 391 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 395 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 477 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF255MAF 397 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 501 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 438 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 505 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 485 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 510 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 481 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 420 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 397 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 511 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 545 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 466 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 424 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF476NBQ 425 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 471 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 505 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 451 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 457 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 551 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 537 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 437 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 455 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 202 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 285 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 297 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 166 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 435 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 211 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 138 bp overlap
EP300 2 datasets
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 576 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 74 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ERG 2 datasets
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 349 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 194 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 310 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 15 datasets
ChIP A673 ENCFF790MVL 599 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 447 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 397 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 270 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 198 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 275 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 249 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 337 bp overlap
ChIP T98G GSE112240.EZH2.T98G 427 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 406 bp overlap
ChIP astrocyte ENCFF365JTP 491 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 279 bp overlap
ChIP keratinocyte ENCFF070STK 472 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 305 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 452 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 172 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 328 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 363 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 282 bp overlap
HDAC1 2 datasets
ChIP PC-3 GSE147455.HDAC1.PC-3 252 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 221 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 184 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 355 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 521 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 209 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 218 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 108 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 480 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 247 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 295 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 347 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 303 bp overlap
MYOD1 4 datasets
ChIP RD GSE137168.MYOD1.RD 274 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 287 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 171 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 168 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 415 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 589 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 154 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 561 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 284 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 458 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.RAD21.T-47D_NaCl-isotonic-triptolide 360 bp overlap
ChIP neural cell ENCFF564MOT 179 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 418 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 139 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 299 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 567 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 249 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 258 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 641 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF042ZSL 369 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 136 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 444 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 596 bp overlap
SMC3 2 datasets
ChIP neural cell ENCFF795YGY 531 bp overlap
ChIP neural cell ENCFF795YGY 434 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 324 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 134 bp overlap
STAT3 3 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 151 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 314 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 274 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 694 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 572 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 259 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 319 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 128 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 365 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 455 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 694 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 482 bp overlap
ZBTB7A 2 datasets
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 237 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 239 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 350 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF585A 1 dataset
ChIP HEK293T GSE78099.ZNF585A.HEK293T 332 bp overlap
ZNF611 1 dataset
ChIP HEK293T GSE78099.ZNF611.HEK293T 248 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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