chr9 : 122,405,953 – 122,406,784
831 bp 118 TFs 4 linked genes
This 831 bp open chromatin element is linked to 4 target genes and is bound by 118 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000234156 at TSS At TSS Proximity
MRRF 141.5 kb Distal Multiome
RBM18 141.5 kb Distal Multiome
NDUFA8 246.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:122,400,953 – 122,411,784
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 218 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 206 bp overlap
ASCL1 3 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 213 bp overlap
BRD4 4 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 59 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 553 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 193 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 493 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CREB1 1 dataset
ChIP LNCaP GSE63034.CREB1.LNCaP 50 bp overlap
CTCF 4 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 154 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
CTCFL 1 dataset
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 152 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 231 bp overlap
E2F6 4 datasets
ChIP A-549 ENCSR000BTC.E2F6.A-549 385 bp overlap
ChIP A549 ENCFF550XVR 481 bp overlap
ChIP A549 ENCFF550XVR 322 bp overlap
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 163 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 302 bp overlap
ChIP A-549 ENCSR000BPT.ELF1.A-549 221 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF4 1 dataset
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
ERG 5 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 522 bp overlap
ChIP K-562 GSE23730.ERG.K-562 161 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 160 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 221 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 353 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 304 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
JUN 3 datasets
ChIP A549 ENCFF846DUV 685 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 315 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 126 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 466 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAX 3 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 442 bp overlap
ChIP A549 ENCFF310XGQ 525 bp overlap
ChIP A549 ENCFF310XGQ 368 bp overlap
MGA 2 datasets
ChIP A-549 GSE112188.MGA.A-549 216 bp overlap
ChIP A-549_empty GSE112188.MGA.A-549_empty 401 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 192 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 160 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 607 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 669 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 241 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 292 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PHF8 2 datasets
ChIP A-549 ENCSR541AOQ.PHF8.A-549 232 bp overlap
ChIP A549 ENCFF815XUD 491 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
POLR2A 3 datasets
ChIP A549 ENCFF748RAW 126 bp overlap
ChIP spleen ENCFF706IUS 284 bp overlap
ChIP spleen ENCFF706IUS 250 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 458 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 255 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 439 bp overlap
PRDM1 1 dataset
ChIP A549 ENCFF012KDW 274 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 135 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 672 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 648 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 504 bp overlap
SIN3A 1 dataset
ChIP A549 ENCFF752ATT 621 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 322 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 254 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 443 bp overlap
SMARCA4 1 dataset
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 382 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 562 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SPDEF 1 dataset
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 561 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 404 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 237 bp overlap
TAF1 1 dataset
ChIP A-549 ENCSR000BPF.TAF1.A-549 268 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 343 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 436 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 225 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 605 bp overlap
YY2 1 dataset
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 227 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zbtb2 1 dataset
Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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