chr9 : 121,221,026 – 121,221,471
445 bp 78 TFs 5 linked genes
This 445 bp open chromatin element is linked to 5 target genes and is bound by 78 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAB14 19.4 kb Distal Multiome
GSN 46.9 kb Distal Multiome
CNTRL 146.4 kb Distal Multiome
STOM 148.9 kb Distal Multiome
ENSG00000227355 149.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:121,216,026 – 121,226,471
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 338 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 93 bp overlap
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 274 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 445 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 202 bp overlap
ChIP H1 ENCFF399KAM 185 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 445 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 445 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 445 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 198 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 445 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 445 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 151 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 387 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 160 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 158 bp overlap
BRD4 3 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 445 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 445 bp overlap
ChIP hESC GSE33281.BRD4.hESC 127 bp overlap
CDK8 1 dataset
ChIP monocyte_IFNg GSE120943.CDK8.monocyte_IFNg 170 bp overlap
CEBPB 1 dataset
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 145 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 144 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 219 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 445 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 259 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 324 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 201 bp overlap
CREBBP 3 datasets
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 166 bp overlap
ChIP monocyte_IFNg-LPS GSE131294.CREBBP.monocyte_IFNg-LPS 280 bp overlap
ChIP monocyte_LPS GSE131294.CREBBP.monocyte_LPS 217 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 445 bp overlap
CTCF 6 datasets
ChIP CD14 ENCSR000ATN.CTCF.CD14 165 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 127 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 117 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 167 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 217 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 365 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 128 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 381 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 115 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 211 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 351 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 247 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 246 bp overlap
FOXA1 2 datasets
ChIP MCF-7 ENCFF465LTH 112 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 71 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 435 bp overlap
GLI4 1 dataset
ChIP HEK293 GSE76494.GLI4.HEK293 64 bp overlap
GTF2F1 1 dataset
ChIP H1 ENCFF399TGL 345 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 157 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 303 bp overlap
JUN 5 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 436 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 313 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 445 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 187 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 296 bp overlap
KDM1A 4 datasets
ChIP H1 ENCFF696SGD 304 bp overlap
ChIP H1 ENCFF696SGD 104 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 77 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 193 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 176 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 162 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 167 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 117 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 162 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 445 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 361 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 439 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 445 bp overlap
ChIP hESC GSE20650.NANOG.hESC 265 bp overlap
ChIP hESC GSE18292.NANOG.hESC 102 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 241 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 243 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 268 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 319 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 134 bp overlap
ChIP H1 ENCFF566JSR 166 bp overlap
ChIP H1 ENCFF770YBQ 309 bp overlap
POU5F1 16 datasets
ChIP BG03 GSE21614.POU5F1.BG03 202 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 397 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 445 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 407 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 445 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 204 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 217 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 323 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 225 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 266 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 352 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 445 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 253 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 424 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 247 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 294 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 372 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 433 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 445 bp overlap
ChIP H1 ENCFF905HFL 373 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 445 bp overlap
RELA 4 datasets
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 238 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 206 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 229 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.RELA.THP-1_eGFP-Pam3csk-4h 260 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 445 bp overlap
ChIP GM12878 ENCFF217ADF 321 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 358 bp overlap
REST 1 dataset
ChIP HL-60 ENCFF589LOF 267 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 308 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 176 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 176 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 137 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 279 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 341 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 219 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 182 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 440 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 445 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 392 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 434 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 425 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 445 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 285 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 445 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 237 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 142 bp overlap
ChIP hESC GSE69479.SOX2.hESC 236 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 437 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 362 bp overlap
SP4 2 datasets
ChIP H1 ENCFF473YOB 276 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 216 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 296 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 291 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 445 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 160 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 320 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 306 bp overlap
STAT3 3 datasets
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 316 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 415 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 445 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 369 bp overlap
ChIP H1 ENCFF478SZO 353 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 445 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 372 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 429 bp overlap
ChIP hESC GSE122298.TBP.hESC 196 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 212 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 302 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 54 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 270 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 411 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 302 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 310 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 445 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 107 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 232 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 257 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 64 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 330 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 95 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 417 bp overlap
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