chr1 : 180,353,978 180,354,351
373 bp 111 TFs 0 linked genes
This 373 bp open chromatin element has no linked target genes and is bound by 111 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:180,348,978 – 180,359,351
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 151 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 238 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 328 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 341 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 290 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 212 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 254 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 319 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 346 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 172 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 373 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 199 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 103 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 312 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 278 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 160 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 312 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 184 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 205 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 144 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 291 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 4 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 304 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 337 bp overlap
DUXA 2 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 271 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 347 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 297 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 373 bp overlap
ChIP neural cell ENCFF442QNK 220 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 121 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 220 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 189 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 121 bp overlap
ChIP ZR751_SIGATA_E2 GSE40129.ESR1.ZR751_SIGATA_E2 155 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 174 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 132 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 317 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 250 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 373 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
FOXG1 3 datasets
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXN3 3 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 230 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 373 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 359 bp overlap
ChIP SK-N-SH ENCFF764OZD 336 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 140 bp overlap
GATA3 5 datasets
ChIP Kelly GSE94822.GATA3.Kelly 314 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 259 bp overlap
ChIP SH-SY5Y ENCFF475HYF 373 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 265 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 373 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 235 bp overlap
ChIP DE DE-GATA4-1 368 bp overlap
ChIP DE DE-GATA4-2 370 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 373 bp overlap
ChIP DE DE-GATA6-2 373 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 281 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 342 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 258 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 323 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HAND2 4 datasets
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 232 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 373 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 123 bp overlap
HIF1A 1 dataset
ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap
Hmx2 2 datasets
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 103 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 373 bp overlap
JDP2 2 datasets
Motif DE_48h DE_48h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 265 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 343 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 355 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 317 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 292 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 365 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 201 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 352 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 254 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 212 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 305 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 234 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 306 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 212 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 253 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 226 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 366 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 373 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 279 bp overlap
ChIP hESC GSE18292.NANOG.hESC 248 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 365 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 308 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 373 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 257 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 336 bp overlap
NFE2 2 datasets
Motif DE_48h DE_48h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
NFYA 2 datasets
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 332 bp overlap
NKX2-5 2 datasets
Motif DE_48h DE_48h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
ONECUT1 4 datasets
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
ChIP H9 ERP004206.ONECUT1.H9 223 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 373 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 216 bp overlap
PHOX2A 2 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 4 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 337 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 373 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 373 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 289 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 233 bp overlap
POU5F1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 287 bp overlap
PRDM9 1 dataset
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 300 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 295 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 283 bp overlap
RARA 3 datasets
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 238 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 101 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 294 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 304 bp overlap
ChIP neural cell ENCFF882LXX 312 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rarb 2 datasets
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
SCRT1 2 datasets
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 310 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 263 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 266 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 338 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 373 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 220 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 172 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 167 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 278 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap
SOX2 6 datasets
ChIP H9 GSE46837.SOX2.H9 198 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 354 bp overlap
ChIP hESC GSE69479.SOX2.hESC 188 bp overlap
ChIP hESC GSE18292.SOX2.hESC 203 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 263 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 300 bp overlap
SOX9 3 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SRY 3 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 297 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 250 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 373 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 173 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 347 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 347 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 226 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 373 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 373 bp overlap
Wt1 1 dataset
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 373 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 310 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 205 bp overlap
ZNF157 1 dataset
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF281 1 dataset
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF317 4 datasets
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 174 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 165 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF331VPZ 253 bp overlap
ZNF667 3 datasets
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF671 1 dataset
ChIP HEK293T GSE78099.ZNF671.HEK293T 196 bp overlap
ZNF740 1 dataset
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap