chr9 : 95,770,703 – 95,771,269
566 bp 92 TFs 4 linked genes
This 566 bp open chromatin element is linked to 4 target genes and is bound by 92 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000268926 1.3 kb Proximal Proximity
ERCC6L2-AS1 104.6 kb Distal Multiome
ERCC6L2 104.8 kb Distal Multiome
PTCH1 261.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:95,765,703 – 95,776,269
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 257 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 131 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 514 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 344 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 252 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 397 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 309 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 492 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 522 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 196 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 512 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 260 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 208 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 373 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 181 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 222 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 306 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 226 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 273 bp overlap
EBF1 2 datasets
ChIP MUTUL GSE75503.EBF1.MUTUL 242 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 368 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 245 bp overlap
ELF4 1 dataset
ChIP HepG2 ENCFF752OAT 85 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 310 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 179 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 249 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 387 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 244 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 352 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 211 bp overlap
ChIP DE DE-FOXA2-1 478 bp overlap
ChIP DE DE-FOXA2-2 467 bp overlap
FOXL2 2 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 214 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 298 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 315 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 215 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 239 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 314 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 298 bp overlap
GATA3 3 datasets
ChIP Kelly GSE65664.GATA3.Kelly 322 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 219 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 376 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 566 bp overlap
ChIP DE DE-GATA4-2 550 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 406 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 483 bp overlap
ChIP foregut GSE117136.GATA4.foregut 512 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 454 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 409 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 277 bp overlap
ChIP DE DE-GATA6-1 491 bp overlap
ChIP DE DE-GATA6-2 566 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 566 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 566 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 566 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 566 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 566 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 566 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 529 bp overlap
ChIP foregut GSE117136.GATA6.foregut 422 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 471 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 377 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 331 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 436 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 465 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 566 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 234 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 214 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 179 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 346 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 506 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 425 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 566 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 566 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 566 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 53 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 290 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 384 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 332 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 234 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 379 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 423 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 106 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 291 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 234 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 127 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 464 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 279 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 419 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 360 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 456 bp overlap
ChIP hESC GSE18292.NANOG.hESC 113 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 217 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 440 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 139 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 353 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 346 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 305 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 427 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 169 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 230 bp overlap
RARA 3 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 300 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 203 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 232 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 184 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 171 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 177 bp overlap
REST 4 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP HEK293 ENCFF073DOT 329 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 287 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 133 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 214 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 329 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 299 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 109 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 194 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 173 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 344 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 532 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 518 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 525 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 566 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 532 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 499 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 251 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 223 bp overlap
SMARCA4 4 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 113 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 301 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 468 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 404 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 486 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 514 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 283 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 555 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 465 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 180 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 298 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 146 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 213 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 357 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 282 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 126 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 223 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 272 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 531 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 505 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 555 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 405 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 149 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 220 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 282 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 192 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide GSE114048.TOP2A.KG-1_etoposide 101 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 317 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 332 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 236 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 237 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 566 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 566 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 345 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 378 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 137 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 350 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 238 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 134 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 283 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 111 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF512B 1 dataset
ChIP HepG2 ENCFF126PJB 168 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 131 bp overlap
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 71 bp overlap
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