Transcription factors with Perturb-seq knockdown data for ERCC6L2-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ERCC6L2-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ERCC6L2-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:95,510,553–95,511,685 | 364.4 kb | Distal (>10kb) Multiome HiCAR | 774 | |
| chr9:95,770,703–95,771,269 | 104.6 kb | Distal (>10kb) Multiome | 92 | |
| chr9:95,874,993–95,876,354 | 272 bp | At TSS Multiome | 1044 | |
| chr9:95,907,834–95,908,434 | 32.6 kb | Distal (>10kb) Multiome | 42 |
Genomic view of the ERCC6L2-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.