chr9 : 37,025,271 37,025,777
506 bp 94 TFs 1 linked gene
This 506 bp open chromatin element is linked to PAX5 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PAX5 797 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:37,020,271 – 37,030,777
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP L826 GSE83671.AFF1.L826 269 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 245 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 267 bp overlap
ASH2L 3 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 257 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 144 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 273 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 250 bp overlap
BCL11A 3 datasets
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 52 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 122 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 95 bp overlap
BCLAF1 2 datasets
ChIP GM12878 ENCFF306JRM 400 bp overlap
ChIP GM12878 ENCFF306JRM 334 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 506 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 218 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 326 bp overlap
BRD4 9 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 229 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 420 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 506 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 114 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 506 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 179 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 68 bp overlap
ChIP SEM GSE83671.BRD4.SEM 300 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 332 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 506 bp overlap
CBX8 2 datasets
ChIP A549 ENCFF656LMW 100 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 155 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 189 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 154 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 195 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 58 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 310 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 231 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 240 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 142 bp overlap
EGR1 2 datasets
ChIP GM12878 ENCFF092DJY 108 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 73 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 270 bp overlap
ELF1 4 datasets
ChIP GM12878 ENCFF692SMY 192 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 157 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 158 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 68 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 199 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 203 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 114 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 62 bp overlap
EZH2 28 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 417 bp overlap
ChIP GM23248 ENCFF404ZHM 168 bp overlap
ChIP GM23248 ENCFF506FWX 278 bp overlap
ChIP GM23248 ENCFF506FWX 76 bp overlap
ChIP GM23338 ENCFF613YON 164 bp overlap
ChIP GM23338 ENCFF613YON 357 bp overlap
ChIP GM23338 ENCFF886DXX 307 bp overlap
ChIP H1 ENCFF232NZA 506 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 141 bp overlap
ChIP HepG2 ENCFF912EIW 99 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 247 bp overlap
ChIP T98G GSE112240.EZH2.T98G 289 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 232 bp overlap
ChIP astrocyte ENCFF365JTP 506 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 506 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 506 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 506 bp overlap
ChIP fibroblast of lung ENCFF479BAW 331 bp overlap
ChIP fibroblast of lung ENCFF479BAW 181 bp overlap
ChIP hepatocyte ENCFF118DKH 331 bp overlap
ChIP hepatocyte ENCFF552DZB 333 bp overlap
ChIP keratinocyte ENCFF070STK 246 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 192 bp overlap
ChIP myotube ENCFF857GWB 230 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 506 bp overlap
ChIP neural progenitor cell ENCFF472NFV 506 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 316 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 329 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 300 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 138 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 212 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 230 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 367 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 301 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 185 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 195 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 264 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 293 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 308 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 326 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 302 bp overlap
ChIP GM12878 ENCFF918AID 326 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 222 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 192 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 90 bp overlap
KMT2A 5 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 302 bp overlap
ChIP L826 GSE83671.KMT2A.L826 368 bp overlap
ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 133 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 362 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 506 bp overlap
MAX 4 datasets
ChIP P493-6 GSE36354.MAX.P493-6 102 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 158 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 71 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 93 bp overlap
MAZ 1 dataset
ChIP GM12878 ENCFF404CEP 267 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 248 bp overlap
MEN1 1 dataset
ChIP SEM GSE83671.MEN1.SEM 207 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 482 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 218 bp overlap
MXI1 1 dataset
ChIP GM12878 ENCFF666NJR 234 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 277 bp overlap
MYC 6 datasets
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 288 bp overlap
ChIP NB69 GSE138295.MYC.NB69 226 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 121 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 104 bp overlap
ChIP P493-6_24HR GSE125863.MYC.P493-6_24HR 306 bp overlap
ChIP Raji GSE30726.MYC.Raji 191 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 324 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 489 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 395 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 263 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 285 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 506 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 229 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 180 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 346 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 228 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 279 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 78 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 185 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 506 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 271 bp overlap
POLR2A 25 datasets
ChIP GM10847 ENCFF241PBX 241 bp overlap
ChIP GM12878 ENCFF263VRI 316 bp overlap
ChIP GM12878 ENCFF412KAE 256 bp overlap
ChIP GM12878 ENCFF631ERR 313 bp overlap
ChIP GM12878 ENCFF899QYP 443 bp overlap
ChIP GM12891 ENCFF012SUT 377 bp overlap
ChIP GM12891 ENCFF012SUT 123 bp overlap
ChIP GM12892 ENCFF245LYF 378 bp overlap
ChIP GM12892 ENCFF506PGQ 304 bp overlap
ChIP GM12892 ENCFF542ZFO 300 bp overlap
ChIP GM12892 ENCFF542ZFO 404 bp overlap
ChIP GM15510 ENCFF880HVJ 155 bp overlap
ChIP GM18505 ENCFF311CYB 362 bp overlap
ChIP GM18505 ENCFF311CYB 334 bp overlap
ChIP GM18526 ENCFF599EPS 321 bp overlap
ChIP GM18951 ENCFF079KKO 149 bp overlap
ChIP GM19099 ENCFF726IBN 317 bp overlap
ChIP GM19099 ENCFF726IBN 65 bp overlap
ChIP GM19193 ENCFF599VTO 282 bp overlap
ChIP GM19193 ENCFF599VTO 151 bp overlap
ChIP Raji ENCFF613VGX 322 bp overlap
ChIP Raji ENCFF613VGX 76 bp overlap
ChIP neural cell ENCFF604SPB 103 bp overlap
ChIP spleen ENCFF446ZGT 311 bp overlap
ChIP spleen ENCFF706IUS 173 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 506 bp overlap
RAD21 4 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 151 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 168 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 109 bp overlap
RELA 3 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 225 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 190 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 506 bp overlap
REST 6 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 163 bp overlap
ChIP CD4 GSE49570.REST.CD4 168 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 105 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 101 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 178 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 506 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 338 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 255 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 506 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 198 bp overlap
SIN3A 1 dataset
ChIP GM12878 ENCFF238GUI 351 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 396 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 357 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 140 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 261 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 272 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 506 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 244 bp overlap
SPI1 11 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 75 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 134 bp overlap
ChIP GM12878 ENCFF134LCP 90 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 83 bp overlap
ChIP HL-60 ENCFF645GBT 102 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 108 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 90 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 71 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 92 bp overlap
ChIP primary-B-cell_donorC GSE128834.SPI1.primary-B-cell_donorC 104 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 120 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 155 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 69 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 132 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 83 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 231 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF507HGF 198 bp overlap
ChIP H1 ENCFF881NFR 506 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 488 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 186 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 259 bp overlap
ChIP NT2/D1 ENCFF574SXS 245 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 324 bp overlap
TAF1 1 dataset
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 103 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 99 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 195 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 147 bp overlap
TRIM24 3 datasets
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 391 bp overlap
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 149 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 114 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 230 bp overlap
VDR 2 datasets
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 222 bp overlap
ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 155 bp overlap
YY1 3 datasets
ChIP GM12891 ENCFF460SIS 262 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 269 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 506 bp overlap
ZFP36 1 dataset
ChIP A-549 ENCSR294JWV.ZFP36.A-549 201 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 382 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 159 bp overlap
ZNF384 1 dataset
ChIP GM12878 ENCFF229VSP 107 bp overlap