chr9 : 21,558,668 – 21,558,994
326 bp 86 TFs 1 linked gene
This 326 bp open chromatin element is linked to MIR31HG and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MIR31HG 860 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:21,553,668 – 21,563,994
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AFF4 7 datasets
ChIP HCT-116_SERUM GSE30267.AFF4.HCT-116_SERUM 125 bp overlap
ChIP HCT-116_STARVED GSE30267.AFF4.HCT-116_STARVED 190 bp overlap
ChIP HCT-116_STARVED GSE30267.AFF4.HCT-116_STARVED 93 bp overlap
ChIP HeLa GSE40632.AFF4.HeLa 186 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 173 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 72 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 170 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 196 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 302 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 198 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 158 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 258 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 225 bp overlap
ChIP RKO GSE47190.BRD1.RKO 289 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 319 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 168 bp overlap
BRD3 2 datasets
ChIP A-549 GSE119863.BRD3.A-549 216 bp overlap
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 11 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 187 bp overlap
ChIP HCT-116 GSE57628.BRD4.HCT-116 143 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 326 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 166 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 205 bp overlap
ChIP OVCAR-3_JQ1 GSE77568.BRD4.OVCAR-3_JQ1 185 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 319 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 317 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 226 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 165 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 326 bp overlap
BRD9 1 dataset
ChIP HeLa-S3 GSE129437.BRD9.HeLa-S3 122 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 277 bp overlap
CHD1 4 datasets
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 279 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 159 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 78 bp overlap
ChIP hMSC-TERT_adipocyte GSE89179.CHD1.hMSC-TERT_adipocyte 326 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 266 bp overlap
E2F1 1 dataset
ChIP HMEC-1 GSE62425.E2F1.HMEC-1 88 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 71 bp overlap
EGR1 3 datasets
ChIP HCT116 ENCFF456NPQ 92 bp overlap
ChIP HCT116 ENCFF456NPQ 326 bp overlap
ChIP HCT116 ENCFF456NPQ 99 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 326 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 326 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 326 bp overlap
ELL 1 dataset
ChIP HCT-116 GSE47938.ELL.HCT-116 220 bp overlap
ERG 5 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 271 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 276 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 279 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 200 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 165 bp overlap
ETS1 9 datasets
ChIP 786-O GSE86092.ETS1.786-O 163 bp overlap
ChIP A-549 ENCSR000BPU.ETS1.A-549 149 bp overlap
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 176 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 176 bp overlap
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 181 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 255 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 238 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 255 bp overlap
ChIP PANC-1 GSE59021.ETS1.PANC-1 218 bp overlap
EZH2 9 datasets
ChIP A673 ENCFF955JRZ 145 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 326 bp overlap
ChIP GM23248 ENCFF506FWX 286 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 154 bp overlap
ChIP hepatocyte ENCFF552DZB 288 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 326 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 150 bp overlap
ChIP neural progenitor cell ENCFF472NFV 167 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 326 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 265 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 217 bp overlap
FOSB 1 dataset
ChIP A549 ENCFF029EEU 275 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR000BQO.FOSL2.A-549 326 bp overlap
FOXA1 1 dataset
ChIP PDAC GSE64557.FOXA1.PDAC 199 bp overlap
GATA3 1 dataset
ChIP A-549 ENCSR000BTI.GATA3.A-549 271 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 181 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 137 bp overlap
HOXB13 2 datasets
ChIP A549 ENCFF870NOA 247 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 175 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 298 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 296 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 326 bp overlap
JUN 1 dataset
ChIP A549 ENCFF191QZG 326 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 113 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 277 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 326 bp overlap
KMT2A 5 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 294 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 74 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 215 bp overlap
ChIP MCF-7_C-term_TTP22 GSE90762.KMT2A.MCF-7_C-term_TTP22 115 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 134 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C49 GSE90762.KMT2B.HEK293T_C-term_C49 158 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 90 bp overlap
MED1 2 datasets
ChIP A-549 GSE76893.MED1.A-549 125 bp overlap
ChIP A-549 GSE76893.MED1.A-549 140 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 326 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 326 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 227 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 266 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 277 bp overlap
NCAPH2 5 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 326 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 326 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 326 bp overlap
ChIP IMR-90_ctrl_OIS GSE118494.NCAPH2.IMR-90_ctrl_OIS 151 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 209 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 326 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 186 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 196 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 300 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 326 bp overlap
POLR2A 4 datasets
ChIP HCT116 ENCFF508RDJ 326 bp overlap
ChIP HeLa-S3 ENCFF224LWS 202 bp overlap
ChIP Panc1 ENCFF290KAB 164 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 132 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 207 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 100 bp overlap
PRDM1 3 datasets
ChIP HEK293 ENCFF302TBP 285 bp overlap
ChIP HEK293 ENCFF302TBP 285 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 265 bp overlap
RAD21 3 datasets
ChIP A549 ENCFF264AHX 208 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 245 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 155 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 295 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 116 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 326 bp overlap
RNF2 3 datasets
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 326 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 79 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 164 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 326 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 293 bp overlap
SIN3A 4 datasets
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 270 bp overlap
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 284 bp overlap
ChIP Panc1 ENCFF898EEQ 282 bp overlap
ChIP Panc1 ENCFF898EEQ 259 bp overlap
SMAD3 1 dataset
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 109 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 326 bp overlap
SOX2 3 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 160 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 91 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 221 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 158 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 104 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 52 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 64 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 256 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 326 bp overlap
ChIP HCT-116_Nut3_pThr806 GSE138548.SUPT5H.HCT-116_Nut3_pThr806 204 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 326 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 77 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 315 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCFF715NNJ 296 bp overlap
TCF7L2 17 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 161 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 287 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 222 bp overlap
ChIP HCT-116_C18 GSE127960.TCF7L2.HCT-116_C18 237 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 180 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 193 bp overlap
ChIP HCT116 ENCFF038POZ 105 bp overlap
ChIP HEK293 ENCFF513JQN 260 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 315 bp overlap
ChIP HeLa-S3 ENCFF084KRL 248 bp overlap
ChIP HeLa-S3 ENCFF084KRL 326 bp overlap
ChIP HeLa-S3 ENCFF673QAB 273 bp overlap
ChIP HeLa-S3 ENCSR000EVF.TCF7L2.HeLa-S3 289 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 275 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 152 bp overlap
ChIP Panc1 ENCFF829HHL 187 bp overlap
ChIP Panc1 ENCFF829HHL 326 bp overlap
TEAD1 1 dataset
ChIP HCT-116 GSE108920.TEAD1.HCT-116 77 bp overlap
USF1 1 dataset
ChIP A-549 ENCSR000BPV.USF1.A-549 129 bp overlap
YY1 2 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 232 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 175 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 326 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 82 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 183 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 50 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 322 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 140 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 100 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 326 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 292 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 185 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 171 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 218 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 208 bp overlap
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