chr7 : 138,975,436 138,975,995
559 bp 104 TFs 1 linked gene
This 559 bp open chromatin element is linked to KIAA1549 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
KIAA1549 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:138,970,436 – 138,980,995
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ASCL1 6 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 129 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 128 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 127 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 127 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 128 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 107 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 180 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 195 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 152 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 190 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 559 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 559 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 559 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 366 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 174 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 559 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 241 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 136 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 307 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 320 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 259 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 278 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 250 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 75 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 131 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 210 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 201 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 147 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 283 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 203 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 331 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 161 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 161 bp overlap
EP300 3 datasets
ChIP 697 GSE138031.EP300.697 135 bp overlap
ChIP SK-N-SH ENCFF829RWA 271 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 246 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 128 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 108 bp overlap
ETV1 2 datasets
ChIP GIST GSE22441.ETV1.GIST 133 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 138 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 207 bp overlap
ChIP neural progenitor cell ENCFF018MKA 287 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 535 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 225 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 196 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 506 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 559 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 306 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 390 bp overlap
ChIP DE DE-FOXA2-2 307 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 313 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 295 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 554 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 340 bp overlap
ChIP NGP GSE65664.GATA3.NGP 182 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 224 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 451 bp overlap
ChIP DE DE-GATA4-2 516 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 424 bp overlap
ChIP foregut GSE117136.GATA4.foregut 310 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 365 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 506 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 462 bp overlap
ChIP DE DE-GATA6-2 559 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 451 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 461 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 548 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 290 bp overlap
ChIP foregut GSE117136.GATA6.foregut 338 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 370 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 343 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 191 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 448 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 548 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 559 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 170 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 305 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 267 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 196 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 158 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 514 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 155 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 211 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 65 bp overlap
KDM1A 4 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 252 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 168 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 226 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 135 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 245 bp overlap
MAX 3 datasets
ChIP NB4 ENCFF966MWB 222 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 320 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 184 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 173 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 288 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 201 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 559 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 186 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 318 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 209 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 227 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 559 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 186 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 179 bp overlap
MYCN 8 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 175 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 179 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 125 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 426 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 195 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 176 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 256 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 322 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 184 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 236 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 204 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 544 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 190 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 236 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 173 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 194 bp overlap
MYOG 3 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 225 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 228 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 179 bp overlap
NANOG 3 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCFF065NZG 204 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 346 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 168 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 156 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 152 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 156 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 190 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 195 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 178 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 297 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
OTX2 2 datasets
ChIP WTC11 ENCFF634NAO 235 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 273 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 416 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 559 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 505 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 559 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 417 bp overlap
POU3F2 1 dataset
ChIP hiPSC GSE149017.POU3F2.hiPSC 176 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 282 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 547 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 315 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 139 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 115 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 236 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 185 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 293 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 106 bp overlap
ChIP SK-N-SH ENCFF747MAS 178 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 179 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 363 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 277 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 240 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 163 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 255 bp overlap
RUNX1 2 datasets
ChIP NALM-6 GSE126300.RUNX1.NALM-6 211 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 223 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 186 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 447 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 331 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 142 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 311 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 200 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 289 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 220 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 345 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 244 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 275 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 283 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR GSE137168.SNAI2.SMS-CTR 173 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 408 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 186 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 418 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 180 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 169 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 553 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 341 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 273 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 131 bp overlap
ChIP SK-N-SH ENCFF270OWF 311 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 542 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 542 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 409 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 245 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 237 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 243 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 298 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 298 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 101 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 127 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 228 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 282 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 230 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 412 bp overlap
ZBTB6 2 datasets
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 324 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 159 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 302 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 157 bp overlap
ZNF16 1 dataset
ChIP HEK293 ENCFF231FLW 346 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 109 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 254 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 362 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 129 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 57 bp overlap