chr6 : 42,710,310 42,710,904
594 bp 100 TFs 8 linked genes
This 594 bp open chromatin element is linked to 8 target genes and is bound by 100 transcription factors.
Linked Genes
8 genes
Gene Expression Dist. to TSS Distance Link type
TBCC 35.6 kb Distal Multiome
BICRAL 71.5 kb Distal Multiome
UBR2 146.5 kb Distal Multiome
RPL7L1 169.4 kb Distal Multiome
CNPY3 219.0 kb Distal Multiome
TRERF1 258.5 kb Distal Multiome
PEX6 268.7 kb Distal Multiome
PPP2R5D 274.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:42,705,310 – 42,715,904
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 545 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 523 bp overlap
BRD2 2 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 202 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 196 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 354 bp overlap
BRD4 8 datasets
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 206 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 398 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 239 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 226 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 416 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 349 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 100 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 509 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 358 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 338 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 249 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 404 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 448 bp overlap
CTCF 5 datasets
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
ChIP K-562_sgGal4 GSE132212.CTCF.K-562_sgGal4 177 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 328 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 506 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 503 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 322 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 288 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 257 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 451 bp overlap
ChIP K562 ENCFF895KGN 385 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 288 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 290 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 229 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 282 bp overlap
ETV7 1 dataset
Motif DE_72h DE_72h-ETV7_MA1708.2 9 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 351 bp overlap
FOXA1 45 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 209 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 273 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 217 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 224 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 193 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 171 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 246 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 191 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 146 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 102 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 225 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 302 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 189 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 337 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 207 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 283 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 241 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 211 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 193 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 249 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 277 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 192 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 360 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 444 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 257 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 373 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 235 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 366 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 263 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 274 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 259 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 228 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 254 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 276 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 213 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 192 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 253 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 188 bp overlap
ChIP T47D-A1-2_Dex GSE112491.FOXA1.T47D-A1-2_Dex 175 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 251 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 211 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 325 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 406 bp overlap
FOXA2 9 datasets
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 310 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 161 bp overlap
ChIP DE DE-FOXA2-1 530 bp overlap
ChIP DE DE-FOXA2-2 497 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 376 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 256 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 269 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 366 bp overlap
FOXA3 2 datasets
ChIP K562 ENCFF348SOM 112 bp overlap
ChIP K562 ENCFF781VSC 339 bp overlap
FOXK2 4 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 335 bp overlap
ChIP K-562 ENCSR302AWT.FOXK2.K-562 221 bp overlap
ChIP K562 ENCFF851PFH 399 bp overlap
ChIP K562 ENCFF851PFH 451 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 274 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 174 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 456 bp overlap
ChIP DE DE-GATA4-2 552 bp overlap
ChIP foregut GSE117136.GATA4.foregut 381 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 535 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 589 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 500 bp overlap
ChIP DE DE-GATA6-2 549 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP foregut GSE117136.GATA6.foregut 395 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 410 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 534 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 565 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 594 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 255 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 88 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 384 bp overlap
ChIP K562 ENCFF348IBL 256 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 206 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 333 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 210 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 134 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 183 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 151 bp overlap
LEF1 2 datasets
ChIP K-562 ENCSR343ELW.LEF1.K-562 257 bp overlap
ChIP K562 ENCFF198WCP 406 bp overlap
MAZ 2 datasets
ChIP IMR-90 ENCFF682IKN 345 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 215 bp overlap
MEF2A 3 datasets
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
ChIP K-562 ENCSR000BNV.MEF2A.K-562 218 bp overlap
ChIP K562 ENCFF903PRO 211 bp overlap
MEF2B 1 dataset
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MEF2D 7 datasets
Motif DE_72h DE_72h-MEF2D_MA0773.1 12 bp overlap
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 324 bp overlap
ChIP K562 ENCFF392LDT 410 bp overlap
ChIP K562 ENCFF392LDT 403 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 475 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 530 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 479 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 249 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 258 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 249 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 384 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 491 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 464 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 370 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 407 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 170 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 170 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 232 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 138 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 383 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 486 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 398 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 159 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 330 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 116 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 235 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 436 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELA 2 datasets
ChIP MCF-7_E2_TNF GSE59530.RELA.MCF-7_E2_TNF 199 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 210 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 274 bp overlap
ChIP neural ENCSR000BTV.REST.neural 159 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 358 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 293 bp overlap
ChIP K562 ENCFF421AVO 465 bp overlap
ChIP K562 ENCFF809XVG 451 bp overlap
ChIP MCF-7 ENCFF782EZS 441 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 370 bp overlap
RFX3 1 dataset
Motif DE_72h DE_72h-RFX3_MA0798.3 16 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 594 bp overlap
RUNX1 4 datasets
ChIP K-562 ENCSR414TYY.RUNX1.K-562 285 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 189 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 228 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 127 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 195 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 296 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SKIL 1 dataset
ChIP K-562 ENCSR336DXE.SKIL.K-562 257 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 448 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 141 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 163 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 336 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 261 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 392 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 312 bp overlap
ChIP K562 ENCFF690CFF 428 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 133 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 382 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 230 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 310 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 238 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 452 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 348 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 226 bp overlap
TBP 4 datasets
Motif DE_72h DE_72h-TBP_MA0108.3 7 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 193 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 136 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 128 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 191 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 183 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 274 bp overlap
TEAD4 1 dataset
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 594 bp overlap
ZBTB14 1 dataset
Motif DE_72h DE_72h-ZBTB14_MA1650.2 8 bp overlap
ZBTB7A 3 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 142 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 206 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 162 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 457 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 434 bp overlap
ChIP K562 ENCFF352SDL 478 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 238 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 140 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap