chr4 : 128,682,905 – 128,683,618
713 bp 102 TFs 1 linked gene
This 713 bp open chromatin element is linked to JADE1 and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
JADE1 126.5 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:128,677,905 – 128,688,618
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP WTC11 ENCFF556XTF 305 bp overlap
ChIP WTC11 ENCFF556XTF 445 bp overlap
ASCL1 2 datasets
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 54 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 603 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 363 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 571 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 246 bp overlap
Ahr::Arnt 1 dataset
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 188 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 264 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 336 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 234 bp overlap
BRD4 2 datasets
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 242 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 364 bp overlap
CEBPA 1 dataset
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 220 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 169 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 148 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 488 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 175 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 196 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 394 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 340 bp overlap
CTCF 6 datasets
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 149 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 94 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
CTNNB1 1 dataset
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 299 bp overlap
EBF3 1 dataset
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
ELF2 1 dataset
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
EP300 3 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 200 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ChIP hESC GSE17917.EP300.hESC 445 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 245 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 66 bp overlap
Ebf2 1 dataset
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 216 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 540 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 494 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 369 bp overlap
HSF4 1 dataset
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 143 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 389 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 676 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 713 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 81 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 477 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 339 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 201 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 249 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 168 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 419 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 310 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 136 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 191 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 425 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 713 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 713 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 713 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 676 bp overlap
ChIP hESC GSE20650.NANOG.hESC 395 bp overlap
ChIP hESC GSE18292.NANOG.hESC 309 bp overlap
NEUROD1 1 dataset
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 485 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 431 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 255 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 277 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 367 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 250 bp overlap
Neurod2 1 dataset
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 187 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 146 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 332 bp overlap
ChIP H1 ENCFF566JSR 507 bp overlap
POU4F1 1 dataset
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 286 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 122 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 486 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 713 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 290 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 239 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 482 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 434 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 367 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 394 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 672 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 520 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 207 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 65 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 2 datasets
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 217 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 300 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 300 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 278 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 363 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 136 bp overlap
RUNX3 1 dataset
Motif ES_0h ES_0h-RUNX3_MA0684.3 8 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 493 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 435 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 183 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 117 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 212 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 126 bp overlap
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 423 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 413 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 333 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 86 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 339 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 161 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 486 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 464 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 706 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 474 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 713 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 327 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 433 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 156 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 713 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 449 bp overlap
ChIP hESC GSE18292.SOX2.hESC 161 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 413 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 296 bp overlap
SPI1 5 datasets
ChIP GM12891 ENCFF563IUT 118 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 77 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 80 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 51 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 55 bp overlap
SPIB 2 datasets
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 125 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 110 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 195 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 276 bp overlap
TAF2 1 dataset
ChIP hESC GSE17917.TAF2.hESC 115 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 68 bp overlap
TBP 8 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 216 bp overlap
ChIP hESC GSE122298.TBP.hESC 249 bp overlap
ChIP hESC GSE122298.TBP.hESC 192 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 262 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 230 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 300 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 130 bp overlap
TBX1 1 dataset
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 130 bp overlap
TCF3 2 datasets
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 656 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 359 bp overlap
TP53 3 datasets
ChIP H9 GSE39912.TP53.H9 327 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 194 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 234 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 303 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 245 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 357 bp overlap
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 703 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 461 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 253 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 645 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF707 1 dataset
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN4 2 datasets
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
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