chr4 : 54,109,645 – 54,109,962
317 bp 88 TFs 1 linked gene
This 317 bp open chromatin element is linked to GSX2 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GSX2 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,104,645 – 54,114,962
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 160 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 281 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 170 bp overlap
ARID4B 2 datasets
ChIP WTC11 ENCFF441HDK 317 bp overlap
ChIP WTC11 ENCFF441HDK 209 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 317 bp overlap
ATF1 1 dataset
ChIP WTC11 ENCFF354DFT 317 bp overlap
ATF3 1 dataset
ChIP WTC11 ENCFF519QFH 278 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 317 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 83 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 317 bp overlap
BRD4 4 datasets
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 190 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 112 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 223 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 252 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 148 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 277 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 317 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 177 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 317 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 130 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 317 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 276 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 134 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 317 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 317 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 228 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 317 bp overlap
ERG 2 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 231 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 231 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 223 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 317 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 120 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 242 bp overlap
ChIP MCF-7_MRNAHIST ERP002305.ESR1.MCF-7_MRNAHIST 176 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 65 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 65 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 65 bp overlap
EZH2 11 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 107 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 239 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 192 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 242 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 103 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 174 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 177 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 285 bp overlap
ChIP hepatocyte ENCFF552DZB 317 bp overlap
ChIP hepatocyte ENCFF552DZB 317 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 198 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 175 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 185 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 269 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 317 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 255 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 316 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 317 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 317 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 80 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 317 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 317 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 317 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 317 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 317 bp overlap
JUN 1 dataset
ChIP WTC11 ENCFF172UDA 308 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 317 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 317 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 225 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 194 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 199 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 235 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 124 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 255 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 193 bp overlap
ChIP WTC11 ENCFF223QFY 317 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 135 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 209 bp overlap
MYC 1 dataset
ChIP P493-6_0HR GSE125863.MYC.P493-6_0HR 122 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 317 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 317 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 317 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 86 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 98 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 288 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 120 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 291 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 305 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 278 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 317 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 58 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 71 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF446ZGT 189 bp overlap
ChIP spleen ENCFF706IUS 215 bp overlap
POU5F1 8 datasets
ChIP BG03 GSE21614.POU5F1.BG03 317 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 136 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 317 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 136 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 317 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 305 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 176 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 313 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 317 bp overlap
RAD21 1 dataset
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 143 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 266 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 300 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 184 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 317 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 203 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 317 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 307 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 204 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 317 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 205 bp overlap
SETDB1 1 dataset
ChIP K-562 ENCSR000EWI.SETDB1.K-562 207 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 174 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 277 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 192 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 317 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 144 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 81 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 317 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 317 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 289 bp overlap
SUZ12 6 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 242 bp overlap
ChIP H1 ENCFF881NFR 248 bp overlap
ChIP H1 ENCFF881NFR 169 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 143 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 102 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 214 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 192 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 55 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 106 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 317 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 156 bp overlap
TET2 1 dataset
ChIP Jurkat_RUNX1KD GSE85524.TET2.Jurkat_RUNX1KD 195 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 317 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 241 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 310 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 108 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 97 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 224 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 192 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 247 bp overlap
USF1 2 datasets
ChIP WA01 ENCSR000BIU.USF1.WA01 131 bp overlap
ChIP WTC11 ENCFF699QGS 317 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 277 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 310 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 317 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 317 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 297 bp overlap
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