chr3 : 179,464,296 179,464,620
324 bp 93 TFs 1 linked gene
This 324 bp open chromatin element is linked to MTHFD2P7 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MTHFD2P7 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:179,459,296 – 179,469,620
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 199 bp overlap
AR 1 dataset
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 119 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 324 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 254 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 269 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 297 bp overlap
BRD4 9 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 233 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 219 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 311 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 156 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 129 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 176 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 168 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 274 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 324 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 250 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 165 bp overlap
CEBPA 2 datasets
ChIP T-47D GSE132649.CEBPA.T-47D 215 bp overlap
ChIP T-47D_siCEBPA GSE132649.CEBPA.T-47D_siCEBPA 241 bp overlap
CEBPB 2 datasets
ChIP MCF-7 ENCFF772ZTQ 136 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 208 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCFF867SAS 268 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 248 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 180 bp overlap
ChIP K562 ENCFF180STA 185 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCFF969VBY 201 bp overlap
CTCF 2 datasets
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 239 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 148 bp overlap
E4F1 3 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 313 bp overlap
ChIP K562 ENCFF622HMZ 324 bp overlap
ChIP K562 ENCFF622HMZ 211 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 213 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 266 bp overlap
ELF1 9 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 241 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 168 bp overlap
ChIP K562 ENCFF496AKI 267 bp overlap
ChIP MCF-7 ENCFF305BNP 286 bp overlap
ChIP MCF-7 ENCFF366KVK 324 bp overlap
ChIP MCF-7 ENCFF366KVK 135 bp overlap
ChIP MCF-7 ENCFF687CWI 212 bp overlap
ChIP MCF-7 ENCSR502NRF.ELF1.MCF-7 282 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 303 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 324 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 271 bp overlap
EP300 3 datasets
ChIP AML GSE131939.EP300.AML 114 bp overlap
ChIP MCF-7 ENCFF508OAU 245 bp overlap
ChIP T-47D ENCSR000BLM.EP300.T-47D 155 bp overlap
ERG 5 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 295 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 209 bp overlap
ESR1 17 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 228 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 195 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 201 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 240 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 264 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 264 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 324 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 322 bp overlap
ChIP T-47D_JC4727 GSE126004.ESR1.T-47D_JC4727 188 bp overlap
ChIP T-47D_JC4733 GSE126004.ESR1.T-47D_JC4733 250 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 324 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 324 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 324 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 311 bp overlap
ChIP T-47D_siFOXA1-Veh GSE126004.ESR1.T-47D_siFOXA1-Veh 304 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 164 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 179 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 253 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 189 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 194 bp overlap
ETV1 1 dataset
ChIP LNCaP GSE47120.ETV1.LNCaP 153 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 323 bp overlap
FOXA1 8 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 228 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 318 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 169 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 225 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 229 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 261 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 191 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 298 bp overlap
GABPA 1 dataset
ChIP MCF-7 ENCFF735CHO 324 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 252 bp overlap
ChIP K562 ENCFF015GDS 143 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 207 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 181 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 150 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 156 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 159 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 264 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 193 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 315 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 135 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 68 bp overlap
HSF1 2 datasets
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 204 bp overlap
ChIP SK-BR-3 GSE38901.HSF1.SK-BR-3 255 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 324 bp overlap
INTS11 1 dataset
ChIP HL-60 GSE106359.INTS11.HL-60 308 bp overlap
JUN 2 datasets
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 283 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 229 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 150 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 273 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 283 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 313 bp overlap
ChIP K562 ENCFF320EQC 324 bp overlap
LMO2 3 datasets
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 155 bp overlap
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 152 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 158 bp overlap
MAX 4 datasets
ChIP MCF-7 ENCFF169IXS 324 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 270 bp overlap
ChIP WTC11 ENCFF223QFY 312 bp overlap
ChIP WTC11 ENCFF223QFY 61 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 176 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 182 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCFF144ZFZ 280 bp overlap
MYB 4 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 324 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 324 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 322 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 317 bp overlap
MYC 4 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP MCF-7 ENCFF394LGD 273 bp overlap
ChIP MCF-7 ENCFF542NWJ 248 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 166 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 171 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 128 bp overlap
ChIP K562 ENCFF047YKA 128 bp overlap
ChIP K562 ENCFF163BSI 162 bp overlap
ChIP ProEs GSE59087.NFE2.ProEs 98 bp overlap
NRF1 9 datasets
ChIP HCC1954 GSE67867.NRF1.HCC1954 231 bp overlap
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 133 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 234 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 182 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 145 bp overlap
ChIP K562 ENCFF130SGK 282 bp overlap
ChIP K562 ENCFF689EWI 197 bp overlap
ChIP K562 ENCFF791UHF 191 bp overlap
ChIP MCF-7_Ab_R157-1-3D4 GSE97661.NRF1.MCF-7_Ab_R157-1-3D4 150 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 176 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 297 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 203 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCFF116OCS 278 bp overlap
POLR2A 5 datasets
ChIP HL-60 ENCFF321XKE 295 bp overlap
ChIP HL-60 ENCFF321XKE 256 bp overlap
ChIP MCF-7 ENCFF309IKZ 282 bp overlap
ChIP MCF-7 ENCFF411WCU 286 bp overlap
ChIP suprapubic skin ENCFF748PRQ 277 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 227 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 324 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 209 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 170 bp overlap
REST 1 dataset
ChIP HL-60 ENCFF589LOF 316 bp overlap
RFX5 2 datasets
ChIP MCF-7 ENCFF983ILY 297 bp overlap
ChIP MCF-7 ENCFF983ILY 194 bp overlap
RUNX1 6 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 299 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 299 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 288 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 198 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 240 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 200 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 239 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 324 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 165 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 119 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 304 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 296 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 189 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 185 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 311 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 169 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 243 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 324 bp overlap
SPDEF 2 datasets
ChIP MCF-7 ENCFF827PZY 257 bp overlap
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 162 bp overlap
SPI1 4 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 226 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 260 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 214 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 324 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 122 bp overlap
STAT3 23 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 282 bp overlap
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 229 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 188 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 299 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 281 bp overlap
ChIP MCF-7 GSE152203.STAT3.MCF-7 259 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 255 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 313 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 260 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 267 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 189 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 324 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 324 bp overlap
ChIP T-47D_JC4737 GSE126004.STAT3.T-47D_JC4737 324 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 272 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 314 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 324 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 324 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 324 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 324 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 324 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 324 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 324 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 169 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 278 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 145 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 134 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 293 bp overlap
TFAP2A 2 datasets
ChIP MCF-7 GSE60270.TFAP2A.MCF-7 155 bp overlap
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 223 bp overlap
TFAP2C 3 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 225 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 216 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 227 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 241 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 143 bp overlap
ZNF217 2 datasets
ChIP MCF-7 ENCFF379OSU 324 bp overlap
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 251 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 260 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCFF764ZIC 168 bp overlap
ZNF687 2 datasets
ChIP MCF-7 ENCFF440BFX 277 bp overlap
ChIP MCF-7 ENCSR899BKM.ZNF687.MCF-7 237 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 233 bp overlap