chr3 : 147,388,657 147,389,385
728 bp 108 TFs 2 linked genes
This 728 bp open chromatin element is linked to ZIC4 and ZIC1 and is bound by 108 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ZIC4 3.0 kb Proximal Proximity
ZIC1 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,383,657 – 147,394,385
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 518 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 494 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 195 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 551 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 264 bp overlap
ChIP hESC GSE133412.CBX7.hESC 215 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 176 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 221 bp overlap
CHD7 3 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 137 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 180 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 230 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 129 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 381 bp overlap
CTCF 3 datasets
ChIP neural ENCSR822CEA.CTCF.neural 269 bp overlap
ChIP neural progenitor cell ENCFF581WPG 518 bp overlap
ChIP neural progenitor cell ENCFF581WPG 573 bp overlap
CTNNB1 2 datasets
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 351 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 208 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 109 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
EZH2 25 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 187 bp overlap
ChIP GM23338 ENCFF613YON 654 bp overlap
ChIP GM23338 ENCFF886DXX 133 bp overlap
ChIP H1 ENCFF232NZA 728 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 580 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 190 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 199 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 115 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 200 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 204 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 253 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 368 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 489 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 702 bp overlap
ChIP fibroblast of lung ENCFF479BAW 85 bp overlap
ChIP hepatocyte ENCFF118DKH 151 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 707 bp overlap
ChIP hepatocyte ENCFF552DZB 728 bp overlap
ChIP keratinocyte ENCFF070STK 442 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 160 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 219 bp overlap
ChIP neural progenitor cell ENCFF018MKA 728 bp overlap
ChIP neural progenitor cell ENCFF472NFV 728 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxq1 3 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 237 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 439 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 174 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 360 bp overlap
ChIP hESC GSE133412.JARID2.hESC 173 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 194 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 291 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 335 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 487 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 222 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 222 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCGF2 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 246 bp overlap
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 668 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 381 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 4 datasets
ChIP neural cell ENCFF604SPB 236 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP sigmoid colon ENCFF748YVT 381 bp overlap
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 499 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 113 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 377 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 171 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 210 bp overlap
ChIP neural ENCSR000BTV.REST.neural 156 bp overlap
RNF2 7 datasets
ChIP H1 ENCFF239FFS 728 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 114 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 117 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 155 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 114 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 192 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 155 bp overlap
RREB1 3 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 334 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 728 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 580 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 235 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 250 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 252 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 209 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 200 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 535 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX2 3 datasets
ChIP hiPSC GSE67282.SOX2.hiPSC 170 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 245 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 192 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 259 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 173 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 154 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 214 bp overlap
SUZ12 17 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 418 bp overlap
ChIP H1 ENCFF507HGF 209 bp overlap
ChIP H1 ENCFF881NFR 728 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 240 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 236 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 238 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 251 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 253 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 266 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 256 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 236 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 360 bp overlap
ChIP NT2/D1 ENCFF574SXS 355 bp overlap
ChIP NT2/D1 ENCFF574SXS 94 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 521 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 498 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 211 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 142 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 400 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 219 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 470 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 288 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 232 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB14 2 datasets
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZNF143 3 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 138 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF692 2 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
ZNF76 3 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap