chr3 : 87,268,857 – 87,269,053
196 bp 109 TFs 0 linked genes
This 196 bp open chromatin element has no linked target genes and is bound by 109 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:87,263,857 – 87,274,053
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AR 12 datasets
ChIP LNCaP ERP001226.AR.LNCaP 123 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 118 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 111 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 110 bp overlap
ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 87 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 184 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 122 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 140 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 167 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 145 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 134 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 156 bp overlap
BCL11B 2 datasets
ChIP HEK293 ENCFF859UHP 196 bp overlap
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 171 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 143 bp overlap
BRD2 1 dataset
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 80 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 81 bp overlap
BRD4 8 datasets
ChIP HEK293T GSE51633.BRD4.HEK293T 196 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 155 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 196 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 196 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 196 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 196 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 196 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 171 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 196 bp overlap
CDK9 1 dataset
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 196 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 196 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 195 bp overlap
CTCF 2 datasets
ChIP RH4 GSE83726.CTCF.RH4 150 bp overlap
ChIP body of pancreas ENCFF798MEO 184 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 196 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 178 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 74 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 171 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 196 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 151 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 118 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 97 bp overlap
FOXA1 16 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 180 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 189 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 136 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 150 bp overlap
ChIP HEK293_eGFP_TFS GSE123618.FOXA1.HEK293_eGFP_TFS 173 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 150 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 114 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 55 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 140 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 144 bp overlap
ChIP LNCaP_GSK-48H GSE114266.FOXA1.LNCaP_GSK-48H 111 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 78 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 192 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 196 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 150 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 176 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 196 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 196 bp overlap
ChIP DE DE-FOXA2-2 145 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 95 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 164 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 196 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 169 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 114 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 175 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 196 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 196 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 196 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 196 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 171 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 196 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 196 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 196 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 185 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 190 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 151 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 153 bp overlap
HOXB13 2 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 89 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 196 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 110 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 145 bp overlap
INSM2 2 datasets
ChIP HEK293 ENCFF008ZWC 196 bp overlap
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 157 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 196 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 92 bp overlap
KLF5 2 datasets
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 167 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 138 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 196 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 196 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 133 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 196 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 104 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 51 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 117 bp overlap
MAFK 2 datasets
ChIP A549 ENCFF371EPR 75 bp overlap
ChIP HepG2 ENCFF743ZOF 100 bp overlap
MAX 2 datasets
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 142 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 137 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 196 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 196 bp overlap
MYC 1 dataset
ChIP LNCaP GSE117430.MYC.LNCaP 196 bp overlap
MYCN 3 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 196 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 196 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 196 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 161 bp overlap
MZF1 3 datasets
ChIP HEK293 ENCFF683ZWN 196 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 196 bp overlap
ChIP HEK293 GSE76494.MZF1.HEK293 108 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 112 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 153 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 125 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 172 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 196 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 196 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 194 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 196 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 196 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 196 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 196 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 196 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 164 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 193 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 156 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 195 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 112 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 161 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 52 bp overlap
SIX2 2 datasets
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 153 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 172 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 196 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 146 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 70 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 196 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 189 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 148 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 60 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 187 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 144 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 113 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 196 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 196 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 153 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 137 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 105 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 88 bp overlap
TRIM28 6 datasets
ChIP HEK293 ENCFF265CEM 196 bp overlap
ChIP HEK293 ENCFF265CEM 196 bp overlap
ChIP HEK293 ENCFF582MWI 196 bp overlap
ChIP HEK293 ENCFF582MWI 196 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 123 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 178 bp overlap
TSHZ1 2 datasets
ChIP HEK293 ENCFF893BGV 118 bp overlap
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 190 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 196 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 196 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 196 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 196 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 196 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 196 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 196 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 127 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 196 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 196 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 179 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 196 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 173 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 196 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 166 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 196 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 95 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 172 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 196 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 162 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 196 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 123 bp overlap
ZNF302 1 dataset
ChIP HEK293 ENCFF832SDW 196 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 142 bp overlap
ZNF324 1 dataset
ChIP HEK293 ENCSR768HOH.ZNF324.HEK293 196 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 196 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 183 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 194 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 196 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 196 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 191 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 196 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 186 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 171 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 85 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 196 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 134 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 118 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 196 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 196 bp overlap
ZNF639 1 dataset
ChIP HEK293 ENCSR080CST.ZNF639.HEK293 184 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 129 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 196 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 196 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 125 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 192 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 196 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 196 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 152 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 196 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 196 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCFF343DTU 142 bp overlap
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