chr3 : 72,100,040 72,100,430
390 bp 94 TFs 1 linked gene
This 390 bp open chromatin element is linked to LINC00877 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00877 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:72,095,040 – 72,105,430
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 183 bp overlap
AR 2 datasets
ChIP LNCaP_DHT_100nM_N20 GSE86456.AR.LNCaP_DHT_100nM_N20 224 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 194 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 332 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 218 bp overlap
BACH1 2 datasets
ChIP GM12878 ENCFF576UEQ 271 bp overlap
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 237 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 390 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 350 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 317 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 390 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 390 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 275 bp overlap
BRD2 2 datasets
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 222 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 274 bp overlap
BRD4 13 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 390 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 390 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 230 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 107 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 214 bp overlap
ChIP P493-6_MYC_0H GSE42262.BRD4.P493-6_MYC_0H 310 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 275 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 385 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 261 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 276 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 264 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 262 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 262 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 232 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 174 bp overlap
CDK9 1 dataset
ChIP P493-6 GSE36354.CDK9.P493-6 365 bp overlap
CIITA 1 dataset
ChIP Raji_AB1 GSE52941.CIITA.Raji_AB1 218 bp overlap
CTCF 12 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 236 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 60 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 99 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 75 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 70 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 158 bp overlap
ChIP islet GSE23784.CTCF.islet 143 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 89 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 61 bp overlap
ChIP neutrophil ENCSR785YRL.CTCF.neutrophil 279 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 91 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 296 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 216 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF432UGA 343 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 141 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 390 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 70 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 302 bp overlap
EZH2 5 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 357 bp overlap
ChIP astrocyte ENCFF365JTP 390 bp overlap
ChIP astrocyte ENCFF365JTP 390 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 374 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 390 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 234 bp overlap
FOS 2 datasets
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 56 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 57 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 264 bp overlap
ChIP DE DE-FOXA2-2 313 bp overlap
FOXP1 2 datasets
ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 288 bp overlap
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 146 bp overlap
GATA2 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 291 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 239 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 358 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 275 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 292 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 207 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 245 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 218 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 279 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 60 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 390 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 152 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 384 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 215 bp overlap
MED1 2 datasets
ChIP GM12878 GSE93080.MED1.GM12878 269 bp overlap
ChIP P493-6 GSE36354.MED1.P493-6 276 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 390 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 189 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 73 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 136 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYC 1 dataset
ChIP Raji GSE30726.MYC.Raji 207 bp overlap
MYCN 3 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 143 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 257 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 278 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 145 bp overlap
ChIP H1 ENCFF747ZPQ 212 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 390 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 220 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 317 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 230 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 266 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 249 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 77 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 162 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 221 bp overlap
PDX1 2 datasets
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 154 bp overlap
ChIP islet ERP001456.PDX1.islet 200 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 354 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 219 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 283 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 207 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 374 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 262 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 165 bp overlap
RAD21 5 datasets
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 133 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 228 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 69 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 93 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.RAD21.peripheral-blood-neutrophil_US-1 390 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 390 bp overlap
RFX5 1 dataset
ChIP GM12878 ENCFF768MIX 258 bp overlap
RUNX1 3 datasets
ChIP AML GSE111821.RUNX1.AML 110 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 127 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 107 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 241 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 108 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 257 bp overlap
SKI 2 datasets
ChIP HL-60 GSE107553.SKI.HL-60 184 bp overlap
ChIP HL-60_CRISPRCas9_ctrl GSE107553.SKI.HL-60_CRISPRCas9_ctrl 238 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 390 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 246 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 340 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 193 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 159 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 126 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 173 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 268 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 137 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 231 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 198 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil GSE126755.SMC3.peripheral-blood-neutrophil 197 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 180 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 193 bp overlap
SPI1 3 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 52 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 96 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 69 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 267 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 265 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 135 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 80 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 148 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 86 bp overlap
STAT3 2 datasets
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 159 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 63 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 242 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 124 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 156 bp overlap
YY1 5 datasets
ChIP GM12878 ENCFF908JTL 272 bp overlap
ChIP GM12891 ENCFF460SIS 264 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 291 bp overlap
ChIP H1 ENCFF524BTL 251 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 390 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 297 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 242 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap