chr3 : 32,643,387 32,643,863
476 bp 118 TFs 5 linked genes
This 476 bp open chromatin element is linked to 5 target genes and is bound by 118 transcription factors.
Linked Genes
5 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CNOT10 41.6 kb Distal Multiome
DYNC1LI1 72.8 kb Distal Multiome+HiCAR
CMTM6 140.8 kb Distal Multiome+HiCAR
TRIM71 174.4 kb Distal Multiome
CMTM7 251.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:32,638,387 – 32,648,863
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 187 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 151 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 103 bp overlap
BHLHA15 1 dataset
Motif DE_72h DE_72h-BHLHA15_MA0607.2 10 bp overlap
BHLHE23 1 dataset
Motif DE_72h DE_72h-BHLHE23_MA0817.2 10 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 205 bp overlap
ChIP HepG2 ENCFF175DFS 305 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 323 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 322 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 316 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 258 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF896HSY 284 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
E2F1 1 dataset
ChIP HeLa GSE22478.E2F1.HeLa 180 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 260 bp overlap
EBF1 2 datasets
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 247 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 154 bp overlap
ELF4 1 dataset
Motif DE_72h DE_72h-ELF4_MA0641.1 12 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 174 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 205 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 184 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 216 bp overlap
ESRRA 3 datasets
Motif DE_72h DE_72h-ESRRA_MA0592.4 9 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 282 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 145 bp overlap
ESRRB 1 dataset
Motif DE_72h DE_72h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 248 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 191 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 103 bp overlap
Ebf4 2 datasets
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Esrrg 1 dataset
Motif DE_72h DE_72h-Esrrg_MA0643.2 9 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 6 datasets
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 156 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 50 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 157 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 132 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 360 bp overlap
FOXA2 7 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 139 bp overlap
ChIP DE DE-FOXA2-1 476 bp overlap
ChIP DE DE-FOXA2-2 476 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 107 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 264 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 393 bp overlap
FOXB1 1 dataset
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_72h DE_72h-FOXF2_MA0030.2 9 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
Foxj3 1 dataset
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 476 bp overlap
ChIP DE DE-GATA4-2 476 bp overlap
ChIP foregut GSE117136.GATA4.foregut 396 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 434 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 476 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 476 bp overlap
ChIP DE DE-GATA6-2 476 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
ChIP foregut GSE117136.GATA6.foregut 426 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 261 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 467 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 360 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 403 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 213 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 72 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 230 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 192 bp overlap
ILK 1 dataset
ChIP K-562 ENCSR648INT.ILK.K-562 161 bp overlap
IRF8 1 dataset
Motif DE_72h DE_72h-IRF8_MA0652.2 13 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 362 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 440 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 413 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 137 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 133 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 255 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 224 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_72h DE_72h-NR2F2_MA1111.2 7 bp overlap
NR5A1 1 dataset
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
OLIG1 1 dataset
Motif DE_72h DE_72h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_72h DE_72h-OLIG2_MA0678.1 10 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 146 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Ppara 1 dataset
Motif DE_72h DE_72h-Ppara_MA2338.1 7 bp overlap
Prdm4 1 dataset
Motif DE_72h DE_72h-Prdm4_MA1647.3 11 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
SCRT1 1 dataset
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 418 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF21 1 dataset
Motif DE_72h DE_72h-TCF21_MA1568.2 10 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 2 datasets
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_72h DE_72h-TFAP2C_MA0815.1 13 bp overlap
TFAP2E 1 dataset
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB6 1 dataset
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 249 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF652 3 datasets
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 344 bp overlap
ChIP HepG2 ENCFF331VPZ 174 bp overlap
ZNF75A 1 dataset
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap