chr2 : 66,537,018 66,537,417
399 bp 122 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 122 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:66,532,018 – 66,542,417
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP HEK293T ENCFF302BEZ 281 bp overlap
ChIP HEK293T ENCSR760UKJ.ARNT.HEK293T 208 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 269 bp overlap
ASCL1 3 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 153 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 330 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 125 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 226 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 320 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO GSE138084.BRD3.THP-1_DMSO 209 bp overlap
BRD4 7 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 369 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 221 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 209 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 399 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 399 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 329 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 189 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 295 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 192 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 300 bp overlap
CTCF 2 datasets
ChIP islet ERP004003.CTCF.islet 158 bp overlap
ChIP neuron GSE115407.CTCF.neuron 343 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 265 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 264 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 370 bp overlap
ChIP neural cell ENCFF442QNK 399 bp overlap
ESR1 11 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 314 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 199 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 147 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 305 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 399 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 230 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 399 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 193 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 288 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 399 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 317 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 217 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 399 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 362 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 399 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 201 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 310 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 318 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 302 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 335 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 399 bp overlap
ChIP DE DE-FOXA2-2 399 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 245 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 372 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 264 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 382 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 231 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 319 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 170 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 242 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 346 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 325 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 149 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 349 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 289 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 238 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 258 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 373 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 247 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 388 bp overlap
MYCN 4 datasets
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 101 bp overlap
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 151 bp overlap
ChIP IMR-5_DMSO GSE78957.MYCN.IMR-5_DMSO 162 bp overlap
ChIP IMR-5_DMSO GSE78957.MYCN.IMR-5_DMSO 154 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 4 datasets
ChIP RD GSE137168.MYOD1.RD 181 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 354 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 299 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 130 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 365 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 399 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 323 bp overlap
NEUROD1 4 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 359 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 268 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 219 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 271 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 346 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 226 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 373 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 326 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 399 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 271 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 283 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 254 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 300 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 399 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 321 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 265 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 357 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 216 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 177 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 137 bp overlap
ChIP islet ERP001456.PDX1.islet 293 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 263 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 399 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 307 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 221 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 355 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 308 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 363 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 385 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 356 bp overlap
REST 3 datasets
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 237 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 109 bp overlap
ChIP neural ENCSR000BTV.REST.neural 228 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 384 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 362 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 399 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 200 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 367 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 311 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 399 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 373 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 399 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 245 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 326 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 293 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 340 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 378 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 205 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 135 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 312 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 134 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 399 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 89 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 270 bp overlap
SMC3 2 datasets
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 347 bp overlap
ChIP neural cell ENCFF795YGY 397 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 313 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 399 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 298 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 391 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 399 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 184 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 147 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 183 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 224 bp overlap
TEAD4 4 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 127 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 386 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 270 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 233 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 399 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1AP1 2 datasets
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 261 bp overlap
ChIP MCF-10A_ctrl GSE115787.YY1AP1.MCF-10A_ctrl 219 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 287 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 258 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 335 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 277 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 372 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCFF839FUF 334 bp overlap
ChIP HEK293 ENCFF839FUF 288 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 184 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 242 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 244 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 241 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 289 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 254 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 168 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 342 bp overlap
ZNF449 3 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 375 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 274 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 399 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 290 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 305 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 243 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 207 bp overlap
ZNF780A 1 dataset
ChIP HEK293T GSE78099.ZNF780A.HEK293T 242 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 246 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 399 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 337 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 309 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap