chrX : 114,584,431 114,585,090
659 bp 99 TFs 1 linked gene
This 659 bp open chromatin element is linked to HTR2C and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HTR2C 349 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:114,579,431 – 114,590,090
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 445 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 192 bp overlap
ChIP WTC11 ENCFF267GQJ 225 bp overlap
ChIP WTC11 ENCFF267GQJ 67 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 213 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 266 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 510 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 70 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 351 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 383 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 202 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 292 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 133 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 83 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 459 bp overlap
BRF1 2 datasets
ChIP H9 GSE94418.BRF1.H9 133 bp overlap
ChIP H9_Activin GSE94418.BRF1.H9_Activin 207 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 266 bp overlap
ChIP WTC11 ENCFF113HIY 414 bp overlap
CBX7 2 datasets
ChIP hESC GSE133412.CBX7.hESC 466 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 259 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 659 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 232 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 136 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 405 bp overlap
CTCF 25 datasets
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 246 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 162 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 230 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 159 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 322 bp overlap
ChIP brain ENCFF163BBN 591 bp overlap
ChIP brain ENCFF685VRG 611 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 147 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 306 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 211 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 267 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 189 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 250 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 192 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 535 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 491 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural progenitor cell ENCFF581WPG 581 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 341 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 246 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 315 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 334 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 385 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 107 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 457 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 119 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 166 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 223 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 280 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP WTC11 ENCFF011YUL 221 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 243 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 242 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 238 bp overlap
EZH2 15 datasets
ChIP A673 ENCFF790MVL 389 bp overlap
ChIP A673 ENCFF790MVL 171 bp overlap
ChIP A673 ENCFF955JRZ 228 bp overlap
ChIP GM23248 ENCFF404ZHM 152 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 350 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 339 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 192 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 275 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 285 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 609 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 382 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 130 bp overlap
ChIP keratinocyte ENCFF070STK 232 bp overlap
ChIP keratinocyte ENCFF070STK 185 bp overlap
ChIP neural progenitor cell ENCFF472NFV 659 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 342 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 285 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 183 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 246 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 297 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 659 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 228 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 302 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 327 bp overlap
JUN 1 dataset
ChIP WTC11 ENCFF172UDA 208 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 659 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 377 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 267 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 356 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MBD2 2 datasets
ChIP HMEC-1 GSE63233.MBD2.HMEC-1 273 bp overlap
ChIP HeLa GSE41006.MBD2.HeLa 171 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 307 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 217 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 276 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94782.MYCN.Kelly 159 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 182 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 325 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 352 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 226 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 403 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 221 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 659 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 360 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 659 bp overlap
NR3C1 2 datasets
ChIP WTC11 ENCFF422OEM 443 bp overlap
ChIP WTC11 ENCFF422OEM 541 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 377 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 346 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 261 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 325 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX1 1 dataset
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
PAX2 1 dataset
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PAX8 1 dataset
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
PAX9 1 dataset
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 397 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 357 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 384 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 279 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 193 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 353 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 569 bp overlap
RELA 1 dataset
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.RELA.THP-1_eGFP-Pam3csk-0h 146 bp overlap
REST 2 datasets
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 147 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
RNF2 5 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 347 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 266 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 133 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 351 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 489 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 483 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 424 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 167 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 659 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 249 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 312 bp overlap
SMC1 1 dataset
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 152 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 255 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 380 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 355 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 482 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 78 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 312 bp overlap
SUZ12 10 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 334 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 659 bp overlap
ChIP H1 ENCFF881NFR 254 bp overlap
ChIP H1 ENCFF881NFR 200 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 437 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 246 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 305 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 415 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 126 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 659 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 214 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 239 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 219 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 382 bp overlap
TP53 3 datasets
ChIP WTC11 ENCFF359JCU 377 bp overlap
ChIP WTC11 ENCFF359JCU 439 bp overlap
ChIP WTC11 ENCFF359JCU 177 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 158 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 466 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 97 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 341 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 357 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZMAT4 2 datasets
ChIP WTC11 ENCFF608UXZ 185 bp overlap
ChIP WTC11 ENCFF608UXZ 89 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 231 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 659 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF2 1 dataset
ChIP HEK293T GSE78099.ZNF2.HEK293T 269 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 229 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 195 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 169 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 215 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap