chrX : 65,463,548 65,463,998
450 bp 103 TFs 0 linked genes
This 450 bp open chromatin element has no linked target genes and is bound by 103 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:65,458,548 – 65,468,998
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 450 bp overlap
ATF2 3 datasets
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
ChIP H1 ENCFF295GZO 235 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 450 bp overlap
ATF4 1 dataset
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 189 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 220 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 102 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 247 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 185 bp overlap
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 450 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 174 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 112 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 278 bp overlap
CEBPG 1 dataset
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 127 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 229 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 450 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 259 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 360 bp overlap
CREB1 4 datasets
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 302 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 237 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 265 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 334 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 154 bp overlap
Creb5 1 dataset
Motif DE_60h DE_60h-Creb5_MA0840.2 10 bp overlap
DBP 1 dataset
Motif DE_60h DE_60h-DBP_MA0639.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 353 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 402 bp overlap
ChIP hESC GSE17917.EP300.hESC 243 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 111 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 178 bp overlap
FOS 1 dataset
Motif DE_60h DE_60h-FOS_MA1951.2 13 bp overlap
FOS::JUN 1 dataset
Motif DE_60h DE_60h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 382 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 153 bp overlap
GATA2 4 datasets
ChIP ESF GSE108408.GATA2.ESF 162 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 186 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 218 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 207 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 439 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 259 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 450 bp overlap
ChIP DE DE-GATA6-2 420 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 421 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 361 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 299 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 442 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 357 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 318 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 352 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 265 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 237 bp overlap
HOXA3 1 dataset
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
JDP2 1 dataset
Motif DE_60h DE_60h-JDP2_MA0656.2 10 bp overlap
JUN 12 datasets
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 449 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 270 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 440 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 450 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 368 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 450 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 450 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 450 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 210 bp overlap
JUND 5 datasets
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 258 bp overlap
ChIP H1 ENCFF468JZD 204 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 321 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 258 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 450 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 297 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 450 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 394 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 367 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 398 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 410 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIL3 1 dataset
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NIPBL 1 dataset
ChIP hESC GSE64758.NIPBL.hESC 188 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 288 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 338 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
Nr2e3 1 dataset
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 450 bp overlap
ChIP H1 ENCFF770YBQ 381 bp overlap
POU5F1 8 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 386 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 324 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 224 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 450 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 450 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 223 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 297 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 271 bp overlap
REST 1 dataset
ChIP GM23338 ENCSR871KYB.REST.GM23338 127 bp overlap
Rarg 1 dataset
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 305 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 450 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 450 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 450 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 450 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 450 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 450 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 430 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 450 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 440 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 431 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 249 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 194 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 239 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 276 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 312 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 194 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 254 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 450 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 351 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 215 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 341 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 364 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 270 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 214 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 250 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 321 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 450 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 206 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap
SOX2 8 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 222 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 335 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 169 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 396 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 245 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 240 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 253 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 289 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 436 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 168 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 131 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 397 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 433 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 373 bp overlap
ChIP hESC GSE122298.TBP.hESC 330 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 450 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 337 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 324 bp overlap
TEAD1 4 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 378 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 170 bp overlap
ChIP WTC11 ENCFF502QUV 353 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 262 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 8 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 416 bp overlap
ChIP H1 ENCFF778PAX 158 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 210 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 298 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 266 bp overlap
ChIP WTC11 ENCFF114TZS 322 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 373 bp overlap
TEF 1 dataset
Motif DE_60h DE_60h-TEF_MA0843.2 10 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
YAP1 2 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 156 bp overlap
ChIP hiPSC GSE111930.YAP1.hiPSC 117 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 249 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 320 bp overlap
YY1AP1 2 datasets
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 225 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 257 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 246 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 255 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 165 bp overlap