chr19 : 49,447,537 – 49,447,812
275 bp 105 TFs 3 linked genes
This 275 bp open chromatin element is linked to PIH1D1, ALDH16A1, and SLC17A7 and is bound by 105 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PIH1D1 4.0 kb Proximal Proximity
ALDH16A1 5.4 kb Proximal Proximity
SLC17A7 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:49,442,537 – 49,452,812
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP K-562 ENCSR641BSL.AGO1.K-562 56 bp overlap
AGO2 4 datasets
ChIP HepG2 ENCFF252VFI 113 bp overlap
ChIP HepG2 ENCFF252VFI 201 bp overlap
ChIP HepG2 ENCFF773YDL 133 bp overlap
ChIP HepG2 ENCFF773YDL 201 bp overlap
AR 1 dataset
ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 275 bp overlap
BCL11A 4 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 62 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 54 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 188 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 174 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 150 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 230 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 219 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 213 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 170 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 275 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTCF 1 dataset
ChIP A-673 ENCSR611JJS.CTCF.A-673 62 bp overlap
CTCFL 2 datasets
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
DPF2 1 dataset
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 161 bp overlap
EGR1 3 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 78 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 220 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EGR3 2 datasets
Motif DE_24h DE_24h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 2 datasets
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
ELF1 3 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 128 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 275 bp overlap
ChIP SK-N-MC_SHGFP_96H GSE61944.ELF1.SK-N-MC_SHGFP_96H 117 bp overlap
ESR2 1 dataset
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 275 bp overlap
Foxn1 2 datasets
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
Motif ES_0h ES_0h-Foxn1_MA1684.1 6 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 69 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 96 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 275 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 267 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 275 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 275 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 180 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 164 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 155 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 137 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 151 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 183 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 81 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGT.IRF1.K-562 158 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 275 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 145 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 102 bp overlap
KLF1 5 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCFF159QSW 235 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 275 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 275 bp overlap
KLF10 2 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF13 3 datasets
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
ChIP HEK293 ENCSR946ZLI.KLF13.HEK293 187 bp overlap
KLF14 3 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 275 bp overlap
KLF15 2 datasets
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF16 4 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
ChIP HEK293 ENCFF558HSJ 275 bp overlap
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 232 bp overlap
KLF2 2 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
KLF4 5 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 222 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF7 2 datasets
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
KLF9 5 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 200 bp overlap
ChIP HEK293 ENCFF588INF 235 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 275 bp overlap
MAZ 6 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 275 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 174 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 144 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 275 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 166 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 112 bp overlap
NFE2L2 1 dataset
ChIP A-549 ENCSR584GHV.NFE2L2.A-549 50 bp overlap
NFIB 1 dataset
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NFKB2 1 dataset
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
PATZ1 4 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 214 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 275 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 83 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 263 bp overlap
POLR2A 8 datasets
ChIP HeLa-S3 ENCFF224LWS 83 bp overlap
ChIP HeLa-S3 ENCFF224LWS 275 bp overlap
ChIP HeLa-S3 ENCFF224LWS 101 bp overlap
ChIP HepG2 ENCFF718XAJ 210 bp overlap
ChIP K562 ENCFF137JSF 270 bp overlap
ChIP K562 ENCFF137JSF 201 bp overlap
ChIP SK-N-MC ENCFF088IVG 275 bp overlap
ChIP spleen ENCFF446ZGT 164 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 275 bp overlap
ChIP K562 ENCFF648YPL 275 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 63 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 231 bp overlap
Plagl1 2 datasets
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR506CVF.RB1.K-562 115 bp overlap
RBFOX2 7 datasets
ChIP HepG2 ENCFF554DMZ 156 bp overlap
ChIP HepG2 ENCFF554DMZ 131 bp overlap
ChIP HepG2 ENCFF939HTZ 156 bp overlap
ChIP HepG2 ENCFF939HTZ 131 bp overlap
ChIP HepG2 ENCFF939HTZ 57 bp overlap
ChIP K562 ENCFF196WTG 275 bp overlap
ChIP K562 ENCFF967GRF 275 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 110 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 64 bp overlap
RBM39 4 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 266 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 266 bp overlap
ChIP HepG2 ENCFF084YZE 164 bp overlap
ChIP HepG2 ENCFF801JUH 168 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 90 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 244 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 112 bp overlap
SMAD2 2 datasets
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 275 bp overlap
SMAD3 3 datasets
Motif DE_24h DE_24h-SMAD3_MA0795.1 10 bp overlap
Motif ES_0h ES_0h-SMAD3_MA0795.1 10 bp overlap
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 237 bp overlap
SMAD5 3 datasets
Motif DE_24h DE_24h-SMAD5_MA1557.1 10 bp overlap
Motif ES_0h ES_0h-SMAD5_MA1557.1 10 bp overlap
ChIP K-562 ENCSR000FCD.SMAD5.K-562 134 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 87 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 88 bp overlap
SP1 6 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 226 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 234 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 275 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 237 bp overlap
SP2 5 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
ChIP HEK293 ENCFF181QXT 275 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 275 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 237 bp overlap
SP3 4 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
ChIP HEK293 ENCFF087XLA 262 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 275 bp overlap
SP4 4 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 275 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 214 bp overlap
SP8 2 datasets
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 2 datasets
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 54 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 275 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 216 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 228 bp overlap
TBP 6 datasets
ChIP K-562 GSE55306.TBP.K-562 209 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 198 bp overlap
ChIP hESC GSE122298.TBP.hESC 165 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 114 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 164 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 143 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 72 bp overlap
TFAP2A 6 datasets
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0872.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 4 datasets
Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 6 datasets
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0815.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 275 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 275 bp overlap
Tfcp2l1 1 dataset
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 51 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 275 bp overlap
ZBED4 2 datasets
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 275 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 170 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 239 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 176 bp overlap
ZKSCAN3 1 dataset
Motif ES_0h ES_0h-ZKSCAN3_MA1973.2 14 bp overlap
ZMYND11 1 dataset
ChIP HeLa GSE51672.ZMYND11.HeLa 111 bp overlap
ZNF148 3 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 275 bp overlap
ZNF281 4 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 182 bp overlap
ZNF682 2 datasets
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF684 2 datasets
Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF707 2 datasets
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 227 bp overlap
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