chr2 : 2,331,746 2,332,398
652 bp 102 TFs 0 linked genes
This 652 bp open chromatin element has no linked target genes and is bound by 102 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:2,326,746 – 2,337,398
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP NGP GSE134626.ARID1A.NGP 166 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 270 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 522 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 244 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 348 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 221 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 324 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 524 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 373 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 176 bp overlap
BRD4 19 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 338 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 652 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 284 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 617 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 317 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 579 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 488 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 652 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 598 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 268 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 387 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 354 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 196 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 652 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 366 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 652 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 369 bp overlap
ChIP hESC GSE33281.BRD4.hESC 75 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 650 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 426 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 576 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 240 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 171 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 178 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 393 bp overlap
CTCF 7 datasets
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 306 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 137 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 345 bp overlap
ChIP islet GSE23784.CTCF.islet 155 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 335 bp overlap
ChIP neural cell ENCFF335ADI 488 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 407 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 133 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 442 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 162 bp overlap
ChIP neural cell ENCFF442QNK 652 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 429 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 303 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 85 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 199 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 82 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA1 1 dataset
ChIP LNCaP_GSK-4H GSE114266.FOXA1.LNCaP_GSK-4H 110 bp overlap
GATA2 4 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 528 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 87 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 423 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 191 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 470 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 138 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 562 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 151 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 292 bp overlap
JUN 3 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 451 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 552 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 419 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 192 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 242 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 245 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 316 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 99 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
ChIP WTC11 ENCFF223QFY 420 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 470 bp overlap
MEF2D 1 dataset
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 214 bp overlap
MXI1 4 datasets
ChIP SK-N-SH ENCFF746HVJ 245 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 590 bp overlap
ChIP neural cell ENCFF623HQN 416 bp overlap
ChIP neural cell ENCFF623HQN 152 bp overlap
MYC 6 datasets
ChIP H1 ENCFF794ZJT 265 bp overlap
ChIP Kelly GSE138295.MYC.Kelly 652 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 516 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 647 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 540 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 142 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 464 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 395 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 553 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 230 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 398 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 503 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 330 bp overlap
ChIP NGP GSE80151.MYCN.NGP 449 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 390 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 464 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 559 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 202 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 410 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 389 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 278 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 150 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 236 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 62 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 521 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 460 bp overlap
ChIP neural cell ENCFF604SPB 462 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 203 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 266 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 197 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 452 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 552 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 581 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 285 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 312 bp overlap
ChIP neural cell ENCFF564MOT 652 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 212 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 145 bp overlap
REST 6 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 208 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 136 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 570 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RFX1 2 datasets
ChIP K562 ENCFF809XVG 84 bp overlap
ChIP MCF-7 ENCFF973QAD 53 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 110 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 280 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 212 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 250 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 171 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 7 datasets
ChIP NGP GSE134626.SMARCA4.NGP 274 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 652 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 247 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 545 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 424 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 418 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 411 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 369 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 439 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 365 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 321 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 290 bp overlap
SMC3 2 datasets
ChIP neural cell ENCFF795YGY 576 bp overlap
ChIP neural cell ENCFF795YGY 576 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 382 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 187 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 218 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 321 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 135 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 278 bp overlap
ChIP neural cell ENCFF468SPD 146 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 213 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 169 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 324 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 361 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
ChIP SK-N-SH ENCFF869XXQ 459 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 601 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 547 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 263 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 342 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 334 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 174 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 226 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 568 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 254 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 254 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 503 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 225 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 267 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF317 1 dataset
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF565 1 dataset
ChIP HEK293T GSE78099.ZNF565.HEK293T 286 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap