chr15 : 66,565,732 – 66,566,041

309 bp 100 TFs 1 linked gene

This 309 bp open chromatin element is linked to LCTL and is bound by 100 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LCTL		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

100 transcription factors

AGO1 2 datasets

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 241 bp overlap

ChIP Hep-G2 GSE120104.AGO1.Hep-G2 194 bp overlap

AR 1 dataset

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 169 bp overlap

ARID1A 2 datasets

ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 286 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 201 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 309 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 297 bp overlap

BACH1 4 datasets

ChIP H1 ENCFF282VDB 162 bp overlap

ChIP Hep-G2 ENCSR699TNT.BACH1.Hep-G2 80 bp overlap

ChIP SW1990 GSE124406.BACH1.SW1990 83 bp overlap

ChIP WA01 ENCSR000EBQ.BACH1.WA01 210 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 253 bp overlap

BRD2 2 datasets

ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 309 bp overlap

ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 289 bp overlap

BRD4 6 datasets

ChIP CHL-1 GSE95585.BRD4.CHL-1 309 bp overlap

ChIP COLO-741 GSE73319.BRD4.COLO-741 253 bp overlap

ChIP HCC1395 GSE63581.BRD4.HCC1395 255 bp overlap

ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 222 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 309 bp overlap

ChIP hESC GSE33281.BRD4.hESC 112 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 309 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 309 bp overlap

CHD7 2 datasets

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 296 bp overlap

ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 245 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 105 bp overlap

CREBBP_M768 1 dataset

ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 89 bp overlap

CREBL2 1 dataset

ChIP HepG2 ENCFF512MWV 132 bp overlap

CTCF 1 dataset

ChIP HCT-116 GSE131606.CTCF.HCT-116 169 bp overlap

DPF2 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 131 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 148 bp overlap

E2F1 1 dataset

ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 262 bp overlap

EGR1 1 dataset

ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 309 bp overlap

ETS1 1 dataset

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 102 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 309 bp overlap

EZH2 1 dataset

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 290 bp overlap

FOS 1 dataset

ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 181 bp overlap

FOSL2 4 datasets

ChIP HepG2 ENCFF548CXY 182 bp overlap

ChIP LPS141 GSE111253.FOSL2.LPS141 66 bp overlap

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 180 bp overlap

ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 205 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 116 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 309 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap

HNRNPL 1 dataset

ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 238 bp overlap

HNRNPLL 1 dataset

ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 283 bp overlap

HOXA3 1 dataset

ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 287 bp overlap

IFNA1 1 dataset

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 177 bp overlap

JUN 4 datasets

ChIP HUES-8 GSE109524.JUN.HUES-8 309 bp overlap

ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 220 bp overlap

ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 309 bp overlap

ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 217 bp overlap

KDM2A 1 dataset

ChIP HepG2 ENCFF491GTR 309 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 224 bp overlap

KDM5B 1 dataset

ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 175 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 134 bp overlap

MAF1 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap

MAFK 5 datasets

ChIP H1 ENCFF854XWE 136 bp overlap

ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 75 bp overlap

ChIP HepG2 ENCFF743ZOF 138 bp overlap

ChIP IMR-90 ENCFF336DHZ 68 bp overlap

ChIP WA01 ENCSR000EBS.MAFK.WA01 98 bp overlap

MAX 3 datasets

ChIP H1 ENCFF914VQY 231 bp overlap

ChIP H1 ENCFF914VQY 198 bp overlap

ChIP HepG2 ENCFF507HCX 246 bp overlap

MAZ 2 datasets

ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 131 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 81 bp overlap

MED1 2 datasets

ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 57 bp overlap

ChIP U-87MG GSE36354.MED1.U-87MG 179 bp overlap

MED26 1 dataset

ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 270 bp overlap

MITF 1 dataset

ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 165 bp overlap

MTA1 1 dataset

ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 247 bp overlap

MYCN 3 datasets

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 309 bp overlap

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 68 bp overlap

ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 68 bp overlap

MYNN 1 dataset

ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 201 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 84 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 131 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 160 bp overlap

NFE2 1 dataset

ChIP K-562 ENCSR000FCC.NFE2.K-562 54 bp overlap

NFKB1 2 datasets

ChIP HEK293T GSE129618.NFKB1.HEK293T 97 bp overlap

ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 168 bp overlap

PATZ1 1 dataset

ChIP HepG2 ENCFF723PFC 141 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 309 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 104 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 183 bp overlap

PHF8 4 datasets

ChIP H1 ENCFF427UFV 309 bp overlap

ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 309 bp overlap

ChIP HepG2 ENCFF065NWR 309 bp overlap

ChIP WA01 ENCSR000ATK.PHF8.WA01 222 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 309 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 309 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 110 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 255 bp overlap

PRDM10 1 dataset

ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 152 bp overlap

PTBP1 1 dataset

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 309 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 287 bp overlap

RBM39 1 dataset

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 275 bp overlap

RYBP 1 dataset

ChIP WA01 GSE104690.RYBP.WA01 251 bp overlap

SAP130 1 dataset

ChIP HepG2 ENCFF892EHZ 264 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 213 bp overlap

SIN3A 1 dataset

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 79 bp overlap

SMAD1 1 dataset

ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 255 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 262 bp overlap

SMARCA2 2 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 164 bp overlap

ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 76 bp overlap

SMARCA4 6 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 309 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 309 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 108 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 253 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 309 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 134 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 243 bp overlap

SMARCC1 3 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 174 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 97 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 208 bp overlap

SOX2 3 datasets

ChIP HNSC GSE69479.SOX2.HNSC 123 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 121 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 94 bp overlap

SP1 1 dataset

ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 155 bp overlap

SP5 1 dataset

ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 194 bp overlap

SRSF1 1 dataset

ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 195 bp overlap

SRSF7 1 dataset

ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 201 bp overlap

SS18 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 160 bp overlap

SS18-SSX 1 dataset

ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 102 bp overlap

TAF1 2 datasets

ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 191 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 245 bp overlap

TBP 1 dataset

ChIP WA01 ENCSR000ECB.TBP.WA01 158 bp overlap

TEAD1 2 datasets

ChIP MSTO GSE68170.TEAD1.MSTO 164 bp overlap

ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 128 bp overlap

TEAD4 5 datasets

ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 121 bp overlap

ChIP ESC S26-ESC-d0-TEAD4-exp1 309 bp overlap

ChIP H1 ENCFF778PAX 160 bp overlap

ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 198 bp overlap

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 213 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 309 bp overlap

TGIF2 1 dataset

ChIP WTC11 ENCFF649SHI 70 bp overlap

TP53 1 dataset

ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 263 bp overlap

TWIST1 3 datasets

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 139 bp overlap

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 59 bp overlap

ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 59 bp overlap

VEZF1 2 datasets

ChIP K-562 ENCSR189YMA.VEZF1.K-562 97 bp overlap

ChIP K562 ENCFF053XDV 288 bp overlap

YY1 1 dataset

ChIP Huh-7 GSE97411.YY1.Huh-7 237 bp overlap

ZBTB48 1 dataset

ChIP U2OS GSE96776.ZBTB48.U2OS 309 bp overlap

ZBTB7A 3 datasets

ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 107 bp overlap

ChIP K-562 GSE103445.ZBTB7A.K-562 128 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 90 bp overlap

ZBTB7B 1 dataset

ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 222 bp overlap

ZFY 1 dataset

ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 213 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 245 bp overlap

ZNF274 1 dataset

ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 197 bp overlap

ZNF276 1 dataset

ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 252 bp overlap

ZNF316 1 dataset

ChIP K562 ENCFF838QCD 239 bp overlap

ZNF407 1 dataset

ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 309 bp overlap

ZNF501 1 dataset

ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 221 bp overlap

ZNF598 1 dataset

ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 257 bp overlap

ZNF687 1 dataset

ChIP HepG2 ENCFF653WIX 309 bp overlap

ZNF782 1 dataset

ChIP HepG2 ENCFF449SAF 117 bp overlap