chr15 : 57,219,294 – 57,219,476
182 bp 84 TFs 1 linked gene
This 182 bp open chromatin element is linked to TCF12 and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TCF12 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:57,214,294 – 57,224,476
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 1 dataset
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 103 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 122 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 182 bp overlap
ATF7 4 datasets
ChIP GM12878 ENCFF037PYH 182 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 182 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 182 bp overlap
ChIP K562 ENCFF308SKS 182 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 54 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCFF010ZUU 160 bp overlap
ChIP IMR-90 ENCFF312JYK 118 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 182 bp overlap
BRD4 8 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 120 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 117 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 177 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 182 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 182 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 182 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 158 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 182 bp overlap
CBFA2T3 1 dataset
ChIP Kasumi-1 GSE126953.CBFA2T3.Kasumi-1 140 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 182 bp overlap
CHAMP1 1 dataset
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 136 bp overlap
CHD1 4 datasets
ChIP GM12878 ENCFF566UBH 182 bp overlap
ChIP H1 ENCFF128BID 182 bp overlap
ChIP H1 ENCFF128BID 137 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 155 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 182 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 180 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 149 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 176 bp overlap
EP300 5 datasets
ChIP H1 ENCFF927IYK 182 bp overlap
ChIP SK-N-SH ENCFF829RWA 182 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 158 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 173 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 62 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 182 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 90 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 182 bp overlap
ChIP K562 ENCFF851PFH 155 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 166 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 51 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 143 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 92 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 182 bp overlap
IRF1 4 datasets
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 135 bp overlap
ChIP K-562 GSE129380.IRF1.K-562 149 bp overlap
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 178 bp overlap
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 116 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 133 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 182 bp overlap
JUND 8 datasets
ChIP GM12878 ENCFF086GAB 182 bp overlap
ChIP H1 ENCFF010YXS 182 bp overlap
ChIP H1 ENCFF468JZD 165 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 115 bp overlap
ChIP SK-N-SH ENCFF971JKN 123 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 182 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 131 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 124 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 179 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 139 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 182 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 129 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 182 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 182 bp overlap
ChIP K562 ENCFF455EEO 182 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 182 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 153 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 182 bp overlap
MXI1 4 datasets
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 122 bp overlap
ChIP SK-N-SH ENCFF746HVJ 182 bp overlap
ChIP SK-N-SH ENCFF746HVJ 83 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 182 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 182 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 182 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 182 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 165 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 182 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 182 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 134 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 122 bp overlap
ChIP hESC GSE18292.NANOG.hESC 143 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 170 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 144 bp overlap
ChIP K562 ENCFF047YKA 106 bp overlap
NFE2L2 5 datasets
ChIP A-549 ENCSR584GHV.NFE2L2.A-549 84 bp overlap
ChIP A549 ENCFF474YMB 139 bp overlap
ChIP Hep-G2 ENCSR488EES.NFE2L2.Hep-G2 64 bp overlap
ChIP IMR-90 ENCFF059WEE 137 bp overlap
ChIP IMR-90 ENCSR197WGI.NFE2L2.IMR-90 50 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 152 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 149 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 170 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 165 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 182 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 168 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 127 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 129 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 133 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 182 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 160 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 182 bp overlap
POLR2A 6 datasets
ChIP HL-60 ENCFF321XKE 182 bp overlap
ChIP PFSK-1 ENCFF576NIT 182 bp overlap
ChIP SK-N-MC ENCFF088IVG 182 bp overlap
ChIP SK-N-SH ENCFF683PFH 147 bp overlap
ChIP stomach ENCFF607ZPU 108 bp overlap
ChIP stomach ENCFF820WZN 182 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 182 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 182 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 122 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 182 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 182 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 182 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 182 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 175 bp overlap
PRDM10 4 datasets
ChIP HEK293 ENCFF145WQQ 182 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 163 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 182 bp overlap
ChIP K562 ENCFF740YLK 182 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 182 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 182 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 182 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 115 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 148 bp overlap
RBPJ 2 datasets
ChIP GIC GSE79734.RBPJ.GIC 182 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 161 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 180 bp overlap
REST 1 dataset
ChIP HL-60 ENCFF589LOF 182 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 119 bp overlap
SIN3A 2 datasets
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 107 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 145 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 182 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 182 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 63 bp overlap
SMARCA4 10 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 182 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 182 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 182 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 182 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 182 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 182 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 182 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 182 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 182 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 182 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 182 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 182 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 131 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 142 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 128 bp overlap
STAT3 3 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 151 bp overlap
ChIP OCI-Ly7 GSE50723.STAT3.OCI-Ly7 126 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 182 bp overlap
TAF1 3 datasets
ChIP PFSK1 ENCSR000BQN.TAF1.PFSK1 104 bp overlap
ChIP SK-N-SH ENCFF630ERV 182 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 155 bp overlap
TAL1 1 dataset
ChIP erythroid GSE42390.TAL1.erythroid 106 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 169 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 123 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 131 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 124 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 70 bp overlap
TCF7L2 2 datasets
ChIP K-562 ENCSR888XZK.TCF7L2.K-562 169 bp overlap
ChIP K562 ENCFF543OSB 174 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 118 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 118 bp overlap
TWIST1 5 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 182 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 182 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 182 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 182 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 182 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 167 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 182 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 159 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 147 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 182 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 179 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 182 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 182 bp overlap
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