chr12 : 117,052,572 117,053,115
543 bp 88 TFs 4 linked genes
This 543 bp open chromatin element is linked to 4 target genes and is bound by 88 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
TESC 46.6 kb Distal Multiome+HiCAR
FBXO21 137.6 kb Distal Multiome
FBXW8 142.0 kb Distal Multiome
RNFT2 314.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:117,047,572 – 117,058,115
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 487 bp overlap
ChIP HepG2 ENCFF773YDL 487 bp overlap
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 199 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 242 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 196 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 214 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 312 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 169 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 528 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 303 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 158 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 262 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 221 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 318 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 314 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 329 bp overlap
BRD4 12 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 446 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 249 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 515 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 295 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 331 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 205 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 359 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 183 bp overlap
ChIP hESC GSE33281.BRD4.hESC 217 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 206 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 381 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 229 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 131 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 222 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 179 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 234 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 221 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 172 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 185 bp overlap
EP300 2 datasets
ChIP GM12878 ENCSR000BHB.EP300.GM12878 177 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 268 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 317 bp overlap
FOXP4 2 datasets
ChIP WTC11 ENCFF708TAF 324 bp overlap
ChIP WTC11 ENCFF708TAF 124 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 147 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 256 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 543 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 379 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 215 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 384 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 467 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 452 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 261 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 182 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 196 bp overlap
MAZ 3 datasets
ChIP GM12878 ENCFF404CEP 216 bp overlap
ChIP GM12878 ENCFF453CES 350 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 100 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 150 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 494 bp overlap
MYC 3 datasets
ChIP P493-6 GSE77061.MYC.P493-6 347 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 422 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 185 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 96 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 294 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 277 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 232 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 210 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 341 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 165 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 100 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF245LYF 504 bp overlap
ChIP GM12892 ENCFF506PGQ 477 bp overlap
ChIP GM12892 ENCFF506PGQ 310 bp overlap
POU2F2 2 datasets
ChIP GM12878 ENCFF207RKY 82 bp overlap
ChIP GM12891 ENCFF166YPP 311 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 185 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 473 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 299 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 414 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 186 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 256 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 505 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 232 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 229 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 543 bp overlap
RELA 3 datasets
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 171 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 280 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 156 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 289 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 352 bp overlap
RUNX1 2 datasets
ChIP AML GSE111821.RUNX1.AML 201 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 354 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 227 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 269 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 265 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 265 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 371 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 442 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 295 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 193 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 381 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 324 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 242 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 284 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 464 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 543 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 350 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 543 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 387 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 510 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 543 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 439 bp overlap
SP1 2 datasets
ChIP GM12878 ENCSR000BHK.SP1.GM12878 341 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 181 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 145 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 196 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 242 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 223 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCFF506WWB 257 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 308 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 294 bp overlap
TCF3 4 datasets
ChIP GM12878 ENCFF658WIO 297 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 326 bp overlap
ChIP NPC GSE154479.TCF3.NPC 432 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 462 bp overlap
TCF4 1 dataset
ChIP CAL-1 GSE76147.TCF4.CAL-1 143 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 367 bp overlap
TP53 2 datasets
ChIP WTC11 ENCFF359JCU 396 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 297 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 426 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 204 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 350 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 178 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 300 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 311 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 457 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 254 bp overlap
ZNF263 5 datasets
ChIP HEK293 ENCFF336CWQ 225 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 65 bp overlap
ChIP HepG2 ENCFF626SSV 158 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 93 bp overlap
ChIP WTC11 ENCFF893RTM 144 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 351 bp overlap
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 165 bp overlap