chr12 : 64,400,113 – 64,400,472
359 bp 88 TFs 3 linked genes
This 359 bp open chromatin element is linked to XPOT, C12orf56, and ENSG00000293269 and is bound by 88 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
XPOT 3.9 kb Proximal Proximity
C12orf56 9.4 kb Proximal Proximity
ENSG00000293269 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:64,395,113 – 64,405,472
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 359 bp overlap
ChIP K562 ENCFF938UXQ 200 bp overlap
ARID3A 2 datasets
ChIP K-562 ENCSR000EFY.ARID3A.K-562 138 bp overlap
ChIP K562 ENCFF728CDS 255 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 359 bp overlap
ChIP K562 ENCFF817JQF 359 bp overlap
ATF3 3 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 359 bp overlap
ChIP K562 ENCFF604FPV 359 bp overlap
ChIP K562 ENCFF604FPV 281 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 231 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 199 bp overlap
ChIP K562 ENCFF673OEZ 261 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 262 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 326 bp overlap
CREB3 2 datasets
ChIP K-562 ENCSR093FKD.CREB3.K-562 262 bp overlap
ChIP K562 ENCFF985QJI 287 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 269 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 295 bp overlap
ChIP K562 ENCFF775HUO 229 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 114 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 242 bp overlap
ChIP K562 ENCFF006PJY 226 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 169 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 265 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000FAI.FOS.K-562 127 bp overlap
FOSL1 4 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 359 bp overlap
ChIP K562 ENCFF455MKD 309 bp overlap
ChIP K562 ENCFF455MKD 359 bp overlap
ChIP K562 ENCFF728OTE 221 bp overlap
FOSL2 2 datasets
ChIP SK-N-SH ENCFF127ZDW 215 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 119 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 105 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 349 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 234 bp overlap
ChIP K562 ENCFF255RHV 329 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 197 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 326 bp overlap
ChIP K562 ENCFF088XQT 324 bp overlap
ChIP K562 ENCFF830LLA 359 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 225 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 160 bp overlap
ChIP SK-N-SH ENCFF040SSB 190 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 125 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 357 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 245 bp overlap
ChIP K562 ENCFF317JJX 246 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
JUN 3 datasets
ChIP K562 ENCFF182NTM 226 bp overlap
ChIP K562 ENCFF455LLS 183 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 196 bp overlap
JUND 4 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 199 bp overlap
ChIP K562 ENCFF336RCR 323 bp overlap
ChIP K562 ENCFF830LVJ 140 bp overlap
ChIP SK-N-SH ENCFF551NEQ 277 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF133OLU 295 bp overlap
KLF16 2 datasets
ChIP K562 ENCFF464PIV 245 bp overlap
ChIP K562 ENCFF464PIV 250 bp overlap
KLF6 1 dataset
ChIP K-562 ENCSR297CGF.KLF6.K-562 155 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
MEF2B 1 dataset
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif ES_0h ES_0h-MEF2D_MA0773.1 12 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 359 bp overlap
ChIP K562 ENCFF320GSD 289 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 208 bp overlap
ChIP K562 ENCFF731XJJ 276 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 324 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 359 bp overlap
ChIP hESC GSE18292.NANOG.hESC 159 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 251 bp overlap
ChIP K562 ENCFF866HRM 350 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCFF965AKM 258 bp overlap
NFYA 2 datasets
ChIP K-562 GSE26439.NFYA.K-562 194 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 156 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 251 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 359 bp overlap
NR2F1 3 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 357 bp overlap
ChIP K562 ENCFF221HJH 170 bp overlap
ChIP K562 ENCFF221HJH 311 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 359 bp overlap
NRF1 10 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 181 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 359 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 359 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 177 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 252 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 178 bp overlap
ChIP K562 ENCFF130SGK 216 bp overlap
ChIP K562 ENCFF689EWI 359 bp overlap
ChIP K562 ENCFF791UHF 359 bp overlap
ChIP K562 ENCFF791UHF 359 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 335 bp overlap
ChIP K562 ENCFF286KMN 153 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 114 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 337 bp overlap
ChIP K562 ENCFF236IUS 230 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 319 bp overlap
ChIP adrenal gland ENCFF843OBJ 233 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 335 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 281 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 202 bp overlap
POU5F1B 1 dataset
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRDM10 1 dataset
ChIP K-562 ENCSR120MPG.PRDM10.K-562 204 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 234 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 359 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 219 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 235 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 238 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 327 bp overlap
SMARCC1 3 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 129 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 204 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 190 bp overlap
SMARCE1 3 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 359 bp overlap
ChIP K562 ENCFF690CFF 164 bp overlap
ChIP K562 ENCFF690CFF 359 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 252 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 264 bp overlap
ChIP HCT116 ENCFF800LBN 349 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 243 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 330 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 287 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 151 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 359 bp overlap
ChIP WTC11 ENCFF502QUV 93 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 220 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 318 bp overlap
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 160 bp overlap
USF1 7 datasets
ChIP H1 ENCFF090WVU 163 bp overlap
ChIP HCT116 ENCFF330PYP 220 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 170 bp overlap
ChIP K562 ENCFF633EZB 195 bp overlap
ChIP SK-N-SH ENCFF967PDP 220 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 189 bp overlap
ChIP WTC11 ENCFF699QGS 253 bp overlap
USF2 2 datasets
ChIP IMR-90 ENCFF438KUN 195 bp overlap
ChIP WTC11 ENCFF139JAW 265 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 359 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 359 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 189 bp overlap
ZNF76 1 dataset
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
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