chr12 : 29,710,000 29,710,448
448 bp 119 TFs 0 linked genes
This 448 bp open chromatin element has no linked target genes and is bound by 119 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:29,705,000 – 29,715,448
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116_SERUM GSE30267.AFF4.HCT-116_SERUM 180 bp overlap
AR 1 dataset
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 249 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 277 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 202 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 304 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 448 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 129 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 421 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 240 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 233 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 255 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 194 bp overlap
BRD4 19 datasets
ChIP BE2C GSE80151.BRD4.BE2C 386 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 195 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 260 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 163 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 448 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 448 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 424 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 355 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 176 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 415 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 217 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 422 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 383 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 254 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 391 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 276 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 154 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 354 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 311 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 239 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 294 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 321 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 252 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 235 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 275 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 237 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 115 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EP300 3 datasets
ChIP AML GSE131939.EP300.AML 52 bp overlap
ChIP SK-N-SH ENCFF829RWA 343 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 259 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 324 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 284 bp overlap
ChIP neural progenitor cell ENCFF018MKA 371 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 301 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 428 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 278 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 320 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 263 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 145 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 409 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 322 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 448 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 246 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 320 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 215 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HMGA1 1 dataset
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 113 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 231 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 183 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 417 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 396 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAX 4 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 158 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 304 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 228 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 297 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 384 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 366 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 232 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 279 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 387 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 213 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 181 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 425 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 448 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 273 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 448 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 155 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 324 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 301 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 213 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 354 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 341 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 377 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 273 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 184 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 226 bp overlap
MYOG 3 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 304 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 374 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 5 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 286 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 243 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 168 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 288 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 304 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 235 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 336 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 245 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 448 bp overlap
POLR2A 3 datasets
ChIP esophagus muscularis mucosa ENCFF759BBR 321 bp overlap
ChIP neural cell ENCFF604SPB 290 bp overlap
ChIP sigmoid colon ENCFF754JQR 321 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 376 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 293 bp overlap
ChIP SK-N-SH ENCFF747MAS 241 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 165 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 263 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 350 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 403 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 187 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 375 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 339 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 352 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 315 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 367 bp overlap
ChIP neural ENCSR000BTV.REST.neural 318 bp overlap
ChIP neural cell ENCFF882LXX 353 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 120 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 187 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 97 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 288 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 239 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 274 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 175 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 197 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 145 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 251 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 439 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 238 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 441 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 246 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 182 bp overlap
ChIP SK-N-SH ENCFF270OWF 426 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 364 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 380 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 344 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 312 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 312 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 279 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 332 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 157 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 197 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 272 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 235 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 154 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 163 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 233 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 67 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap