chr10 : 59,847,061 – 59,847,658
597 bp 103 TFs 2 linked genes
This 597 bp open chromatin element is linked to CCDC6 and SLC16A9 and is bound by 103 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CCDC6 59.1 kb Distal Multiome
SLC16A9 137.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:59,842,061 – 59,852,658
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 89 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 414 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 277 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 188 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 114 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 180 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 254 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 287 bp overlap
Bach1::Mafk 2 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 265 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 301 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 379 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 455 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 296 bp overlap
CTCF 4 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 278 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 216 bp overlap
ChIP hESC GSE17917.EP300.hESC 270 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 351 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 270 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 358 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 277 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 286 bp overlap
GLIS2 2 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 325 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 249 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 394 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 261 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 180 bp overlap
HINFP 1 dataset
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
HNF1A 3 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 112 bp overlap
HNF1B 2 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap
HOXA4 4 datasets
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 4 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 4 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 4 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 11 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 420 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 279 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 469 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 597 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 348 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 597 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 597 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 597 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 420 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 196 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 269 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 243 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 239 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 225 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 249 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 309 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 196 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 385 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 353 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 261 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 426 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 379 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 353 bp overlap
ChIP hESC GSE18292.NANOG.hESC 178 bp overlap
ChIP hESC GSE20650.NANOG.hESC 261 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 256 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 250 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 266 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 191 bp overlap
NKX6-1 2 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 2 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR1H4::RXRA 2 datasets
Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif ES_0h ES_0h-NR1H4RXRA_MA1146.2 13 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 466 bp overlap
ChIP H1 ENCFF566JSR 445 bp overlap
ChIP H1 ENCFF833NJP 351 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 146 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 200 bp overlap
ChIP GM23338 ENCFF333SNB 275 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 343 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 370 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 385 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 239 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 180 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 297 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 220 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 363 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 259 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 296 bp overlap
POU6F1 4 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 225 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 359 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 309 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 268 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 104 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 139 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 288 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 163 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 354 bp overlap
ChIP H1 ENCFF896IJG 294 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 216 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 137 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 163 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 399 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 304 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 297 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 221 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 212 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 209 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 300 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 349 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 362 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 350 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 302 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 305 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 319 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 359 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 152 bp overlap
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hESC GSE69479.SOX2.hESC 228 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 280 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 308 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 283 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 207 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 189 bp overlap
TBX19 2 datasets
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
Motif ES_0h ES_0h-TBX19_MA0804.2 17 bp overlap
TBXT 2 datasets
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
Motif ES_0h ES_0h-TBXT_MA0009.2 16 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 206 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 315 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 308 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 257 bp overlap
VENTX 2 datasets
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 198 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZIM3 4 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 277 bp overlap
ZNF136 2 datasets
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF157 2 datasets
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 229 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 209 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
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