chr9 : 20,408,536 20,408,882
346 bp 119 TFs 0 linked genes
This 346 bp open chromatin element has no linked target genes and is bound by 119 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:20,403,536 – 20,413,882
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP HEK293T ENCFF302BEZ 281 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BHLHE40 1 dataset
ChIP HEK293T ENCFF540EYG 346 bp overlap
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 296 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 118 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 181 bp overlap
CDX2 6 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 142 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 346 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 346 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 208 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 253 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 192 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 332 bp overlap
CTCF 3 datasets
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 156 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 137 bp overlap
ChIP transverse colon ENCFF749DPF 272 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 299 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 306 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 142 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 331 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 346 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 319 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 94 bp overlap
FOXA2 1 dataset
ChIP Caco-2 GSE66218.FOXA2.Caco-2 97 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 287 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 331 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 195 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 327 bp overlap
HOXB13 11 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 112 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 110 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 64 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 225 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 265 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 286 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 258 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 222 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 272 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 191 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 209 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 342 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD13 1 dataset
ChIP HEK293 ENCFF590OUV 346 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 119 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 321 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 268 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 222 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 7 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 154 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 346 bp overlap
ChIP HEK293 GSE88976.KLF5.HEK293 306 bp overlap
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 270 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 213 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 316 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 71 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 121 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 61 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 154 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 346 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 346 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 214 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 216 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 346 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 315 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 328 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 269 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 237 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 329 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 329 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 346 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 304 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 137 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 346 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 346 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF610RWV 330 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 346 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 258 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 346 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 346 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 346 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 335 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 346 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 346 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 216 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 70 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 288 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 346 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 268 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 230 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 81 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 251 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 338 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 206 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 192 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap
SMC3 1 dataset
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 265 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 346 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 167 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 315 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 243 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 304 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 326 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 111 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 346 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 225 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 126 bp overlap
TEAD4 2 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 284 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 278 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 332 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 346 bp overlap
ChIP HEK293 ENCFF582MWI 342 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 325 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 346 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 285 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 299 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 194 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 335 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 346 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 332 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 158 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 340 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 78 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 157 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 346 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 346 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 311 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 326 bp overlap
ZNF350 1 dataset
ChIP HEK293 GSE76494.ZNF350.HEK293 246 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 328 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 263 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 281 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 275 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 246 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 289 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 346 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 310 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 346 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 307 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 346 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 346 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 322 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 204 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 193 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 159 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 267 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 285 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 338 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 330 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 258 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 346 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 328 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap