chr9 : 12,880,491 12,881,026
535 bp 96 TFs 0 linked genes
This 535 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:12,875,491 – 12,886,026
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 182 bp overlap
AR 7 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 212 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 202 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 113 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 226 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 141 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 211 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 148 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 166 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 176 bp overlap
BRD4 5 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 129 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 466 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 349 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 214 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 458 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 133 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 208 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 303 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 292 bp overlap
CREBBP 1 dataset
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 438 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 151 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 504 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 459 bp overlap
ChIP sigmoid colon ENCFF682PXQ 173 bp overlap
ESR1 13 datasets
ChIP MCF-7 GSE103023.ESR1.MCF-7 214 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 202 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 211 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 185 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 211 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 480 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 237 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 218 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 287 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 118 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 286 bp overlap
ChIP T-47D_flp-ctrl GSE99479.ESR1.T-47D_flp-ctrl 359 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 437 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 157 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 477 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 369 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 300 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 295 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 81 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 263 bp overlap
FOXA1 7 datasets
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 217 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 140 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 240 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 173 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 173 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 469 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 139 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 197 bp overlap
ChIP DE DE-FOXA2-1 527 bp overlap
ChIP DE DE-FOXA2-2 535 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 253 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 236 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 447 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 147 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 6 datasets
ChIP ESF GSE108408.GATA2.ESF 256 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 217 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 204 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 211 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 242 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 212 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 535 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 281 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 447 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 238 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 250 bp overlap
ChIP SH-SY5Y ENCFF475HYF 386 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 243 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 275 bp overlap
GATA4 5 datasets
ChIP A-549 GSE85002.GATA4.A-549 192 bp overlap
ChIP DE DE-GATA4-1 438 bp overlap
ChIP DE DE-GATA4-2 535 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 535 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 470 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 421 bp overlap
ChIP DE DE-GATA6-2 535 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 390 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 535 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 375 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 528 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 412 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 480 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 535 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 498 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 535 bp overlap
HOXB13 5 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 181 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 90 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 161 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 91 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 368 bp overlap
HSF1 1 dataset
ChIP BPLER GSE38901.HSF1.BPLER 81 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 304 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 328 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 466 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 318 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 59 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 320 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 486 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 140 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 107 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 212 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 395 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 236 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 398 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 273 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 265 bp overlap
NUP98-HOXA9 2 datasets
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 187 bp overlap
ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 167 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 535 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 178 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 535 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 357 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 396 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 164 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 189 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 535 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 334 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 522 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 535 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 535 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 237 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 532 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 345 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 248 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 250 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 274 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 126 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 535 bp overlap
SMARCC1 4 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 291 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 199 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 329 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 535 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 339 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 199 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 189 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 388 bp overlap
SRF 1 dataset
ChIP MCF-7 ENCSR000BVA.SRF.MCF-7 148 bp overlap
STAT3 3 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 310 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 331 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 380 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 279 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 163 bp overlap
TAL1 4 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 151 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 120 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 124 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 387 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 360 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 228 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 339 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 471 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 314 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 469 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 469 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 127 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 253 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 150 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 535 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 470 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 277 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 255 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 295 bp overlap
TWIST1 5 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 231 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 305 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 151 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 305 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 231 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 337 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 535 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 283 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 502 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 410 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 509 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 224 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 471 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 317 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 417 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 291 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 89 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 230 bp overlap
ZNF350 1 dataset
ChIP HEK293 GSE76494.ZNF350.HEK293 163 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 440 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 363 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 398 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 413 bp overlap
ZNF654 2 datasets
ChIP HEK293 ENCFF636WIC 287 bp overlap
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 297 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 189 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 467 bp overlap
ZXDB 3 datasets
ChIP HEK293 ENCFF835SGA 274 bp overlap
ChIP HEK293 ENCFF835SGA 398 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 515 bp overlap