chr6 : 43,103,539 43,103,862
323 bp 142 TFs 0 linked genes
This 323 bp open chromatin element has no linked target genes and is bound by 142 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:43,098,539 – 43,108,862
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
142 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 323 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 323 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 140 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 112 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 129 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 130 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 280 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 317 bp overlap
ChIP islet ERP004003.CTCF.islet 167 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
ESR1 7 datasets
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 107 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 233 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 107 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 213 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 255 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 142 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 142 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 238 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 197 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA6 1 dataset
ChIP DE_D1 S14-DE-d1-GATA6-exp1 110 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 213 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 183 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 276 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 264 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 293 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 173 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 161 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 150 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 167 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 247 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 323 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 301 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 272 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 292 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NIPBL 2 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 294 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 239 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 191 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 250 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 156 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PGR 9 datasets
ChIP AB32 GSE31129.PGR.AB32 305 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 270 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 206 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 264 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 228 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 306 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 274 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 219 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 120 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 323 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 172 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 178 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 323 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RARB 1 dataset
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 323 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 281 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 323 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 188 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 229 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 101 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 316 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 245 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 323 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 98 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 321 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 323 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 323 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 221 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 323 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 155 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 323 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 282 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SOX4.HMLE_Doxycicline_TGFb 248 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 157 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT3 5 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 151 bp overlap
ChIP MDA-MB-361 GSE152203.STAT3.MDA-MB-361 219 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 289 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 225 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 196 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 191 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 183 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 161 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 323 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 264 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 180 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 193 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 5 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 231 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 241 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 251 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 323 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 323 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 107 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 219 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 166 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 256 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 227 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 308 bp overlap
ChIP WTC11 ENCFF352POG 92 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 152 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 146 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap