chr6 : 42,450,521 – 42,450,790
269 bp 76 TFs 1 linked gene
This 269 bp open chromatin element is linked to TRERF1 and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRERF1 470 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:42,445,521 – 42,455,790
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 118 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 259 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 269 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 269 bp overlap
ARID4B 2 datasets
ChIP PC-3 GSE116669.ARID4B.PC-3 162 bp overlap
ChIP WTC11 ENCFF441HDK 269 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 254 bp overlap
BRD2 6 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 232 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 233 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 243 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 178 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 185 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 84 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 269 bp overlap
BRD4 16 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 229 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 269 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 269 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 237 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 269 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 190 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 198 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 153 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 269 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 265 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 269 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 69 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 93 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 261 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 208 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 210 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 104 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 269 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 269 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 58 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 160 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 60 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 269 bp overlap
E2F1 2 datasets
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 269 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 97 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 265 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 269 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 129 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 269 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 103 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 139 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 244 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 56 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 183 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 264 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 210 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
HDAC1 4 datasets
ChIP MCF-7_ARID1A-KO GSE123284.HDAC1.MCF-7_ARID1A-KO 176 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 269 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 100 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 226 bp overlap
HDAC2 3 datasets
ChIP VCaP_ETOH GSE28950.HDAC2.VCaP_ETOH 95 bp overlap
ChIP VCaP_ETOH GSE28950.HDAC2.VCaP_ETOH 86 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 198 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 157 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 117 bp overlap
HOXB13 1 dataset
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 155 bp overlap
INTS11 1 dataset
ChIP HL-60 GSE106359.INTS11.HL-60 269 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 269 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 60 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 59 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 269 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 118 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 269 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 95 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 269 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 269 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 71 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 202 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 148 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 76 bp overlap
ChIP NB4 ENCFF966MWB 183 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 98 bp overlap
ChIP WTC11 ENCFF223QFY 255 bp overlap
ChIP WTC11 ENCFF223QFY 269 bp overlap
MEN1 5 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 269 bp overlap
ChIP MOLM-13 GSE149183.MEN1.MOLM-13 264 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 154 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 55 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 171 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 269 bp overlap
MNT 2 datasets
ChIP MCF-7 ENCFF144ZFZ 269 bp overlap
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 220 bp overlap
MXI1 5 datasets
ChIP H1 ENCFF963FZS 180 bp overlap
ChIP IMR-90 ENCFF040YVH 85 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 269 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 125 bp overlap
ChIP neural cell ENCFF623HQN 269 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 68 bp overlap
MYC 21 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 108 bp overlap
ChIP G-401_EGFP GSE109310.MYC.G-401_EGFP 269 bp overlap
ChIP LNCaP GSE117430.MYC.LNCaP 213 bp overlap
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 267 bp overlap
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 139 bp overlap
ChIP MCF-7 ENCFF542NWJ 207 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 140 bp overlap
ChIP MCF-7 GSE154941.MYC.MCF-7 166 bp overlap
ChIP MDA-MB-231 GSE95303.MYC.MDA-MB-231 113 bp overlap
ChIP MIA-PaCa-2_DMEM GSE143804.MYC.MIA-PaCa-2_DMEM 269 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 245 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 60 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 269 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 163 bp overlap
ChIP U-87MG GSE36354.MYC.U-87MG 194 bp overlap
ChIP U2OS_Doxy GSE77328.MYC.U2OS_Doxy 133 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 122 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 102 bp overlap
ChIP U2OS_EtOH GSE77328.MYC.U2OS_EtOH 103 bp overlap
ChIP U2OS_HA-OmoMYCwt_Doxy GSE77328.MYC.U2OS_HA-OmoMYCwt_Doxy 205 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 138 bp overlap
MYCN 12 datasets
ChIP BE2C GSE80151.MYCN.BE2C 168 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 181 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 83 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 269 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 269 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 269 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 247 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 182 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 269 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 247 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 168 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 147 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 250 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 269 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 149 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 154 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 128 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 169 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 196 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 221 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 239 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 196 bp overlap
POLR2A 6 datasets
ChIP GM23338 ENCFF450WCS 269 bp overlap
ChIP GM23338 ENCFF450WCS 206 bp overlap
ChIP prostate gland ENCFF545MVF 263 bp overlap
ChIP prostate gland ENCFF881OMH 269 bp overlap
ChIP vagina ENCFF384GAB 245 bp overlap
ChIP vagina ENCFF384GAB 269 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 222 bp overlap
RAD21 6 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 195 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 253 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 112 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 223 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 250 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 158 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 269 bp overlap
REST 4 datasets
ChIP CD4 GSE49570.REST.CD4 64 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 165 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 135 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 116 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 134 bp overlap
RUNX1 2 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 183 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 95 bp overlap
RUNX2 2 datasets
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 85 bp overlap
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 241 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 50 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 143 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 59 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 269 bp overlap
ChIP H1 ENCFF149IOE 175 bp overlap
SIN3A 3 datasets
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 269 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 135 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 124 bp overlap
SMARCA4 9 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 209 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 180 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 71 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 209 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 239 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 269 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 269 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 79 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 269 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 211 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 234 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 79 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 120 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 152 bp overlap
TAL1 2 datasets
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 70 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 111 bp overlap
TBP 1 dataset
ChIP hESC_10h GSE122298.TBP.hESC_10h 142 bp overlap
TP53 3 datasets
ChIP GM06170 GSE55727.TP53.GM06170 113 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 107 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 118 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 164 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 164 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 89 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 112 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 151 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 269 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 63 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 136 bp overlap
Huangfu Lab · Publications · Resources · Contact