chr6 : 20,466,756 20,467,411
655 bp 156 TFs 3 linked genes
This 655 bp open chromatin element is linked to E2F3, CDKAL1, and MBOAT1 and is bound by 156 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
E2F3 63.4 kb Distal Multiome
CDKAL1 67.4 kb Distal Multiome
MBOAT1 254.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:20,461,756 – 20,472,411
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
156 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 298 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Ar 1 dataset
Motif ES_0h ES_0h-Ar_MA0007.4 16 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 217 bp overlap
CTCF 1 dataset
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 113 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 294 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 440 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 131 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 109 bp overlap
ChIP GM12878 ENCFF918AID 74 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 106 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 484 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 107 bp overlap
KLF3 1 dataset
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 199 bp overlap
MGA 1 dataset
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 342 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 136 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 644 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 349 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 179 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 383 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 388 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 221 bp overlap
ChIP hESC GSE18292.NANOG.hESC 145 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 60 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 435 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 7 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 655 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 190 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 202 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 410 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 363 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
Pgr 1 dataset
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 185 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 126 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 242 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 414 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 445 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 423 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 480 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 271 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 141 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
TBR1 1 dataset
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif ES_0h ES_0h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif ES_0h ES_0h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 134 bp overlap
TGIF1 1 dataset
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 273 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
USF1 2 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 158 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
ZBTB18 2 datasets
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF274 1 dataset
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF384 1 dataset
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap