chr5 : 112,628,179 112,628,780
601 bp 116 TFs 1 linked gene
This 601 bp open chromatin element is linked to LINC02200 and is bound by 116 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02200 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:112,623,179 – 112,633,780
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 140 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 76 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 134 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 462 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 193 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 168 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 177 bp overlap
BRD4 7 datasets
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 349 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 226 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 301 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 470 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 433 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 473 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 250 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 297 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK9 4 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 316 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 257 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 95 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 234 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 535 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 244 bp overlap
CTCF 65 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 273 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 373 bp overlap
ChIP MM.1S ENCFF869JMQ 421 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 401 bp overlap
ChIP Peyer's patch ENCFF701KWW 351 bp overlap
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyer's patch ENCFF828IDE 341 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 387 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 341 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 334 bp overlap
ChIP adrenal gland ENCFF596QXB 431 bp overlap
ChIP adrenal gland ENCFF886WNR 501 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 380 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 343 bp overlap
ChIP adrenal-gland ENCSR408ZEE.CTCF.adrenal-gland 200 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 260 bp overlap
ChIP body of pancreas ENCFF269EDN 431 bp overlap
ChIP body of pancreas ENCFF438KTE 445 bp overlap
ChIP brain ENCFF099ASU 498 bp overlap
ChIP brain ENCFF099ASU 298 bp overlap
ChIP brain ENCFF685VRG 571 bp overlap
ChIP brain ENCFF685VRG 311 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 227 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 334 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 275 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 340 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 457 bp overlap
ChIP endodermal cell ENCFF471YCZ 286 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 121 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 417 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 359 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 317 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 305 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 307 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 252 bp overlap
ChIP islet ERP004003.CTCF.islet 322 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 157 bp overlap
ChIP kidney ENCFF335EKK 185 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 177 bp overlap
ChIP nephron ENCFF589HXU 521 bp overlap
ChIP nephron ENCFF972IQB 465 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 342 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 535 bp overlap
ChIP neural cell ENCFF335ADI 271 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural progenitor cell ENCFF581WPG 554 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 287 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 300 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 349 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 172 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 421 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP prostate_gland ENCSR829HTO.CTCF.prostate_gland 184 bp overlap
ChIP sigmoid colon ENCFF219LPW 405 bp overlap
ChIP testis ENCFF128XQJ 371 bp overlap
ChIP thyroid gland ENCFF204HWS 371 bp overlap
ChIP thyroid gland ENCFF631QRY 457 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 370 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 505 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 270 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 233 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 330 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF813OXE 170 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 239 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 350 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 360 bp overlap
ChIP neural cell ENCFF442QNK 504 bp overlap
ChIP neural cell ENCFF442QNK 411 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 125 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 117 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 474 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 268 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 194 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 172 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 298 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GLIS2 2 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
GRHL2 3 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 284 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 112 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 164 bp overlap
HOXB13 2 datasets
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 425 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 162 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
HSF1 1 dataset
ChIP colon_tumor GSE38901.HSF1.colon_tumor 172 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 449 bp overlap
MAFF 6 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
ChIP HeLa-S3 ENCFF783SBT 277 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 226 bp overlap
ChIP HepG2 ENCFF452YUT 174 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 233 bp overlap
ChIP K562 ENCFF071YKK 281 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 513 bp overlap
ChIP K562 ENCFF455EEO 335 bp overlap
MAFK 13 datasets
ChIP A549 ENCFF371EPR 350 bp overlap
ChIP GM12878 ENCFF605LFT 265 bp overlap
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 134 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 253 bp overlap
ChIP HepG2 ENCFF743ZOF 183 bp overlap
ChIP HepG2 ENCFF767LDG 79 bp overlap
ChIP IMR-90 ENCFF336DHZ 152 bp overlap
ChIP K-562 ENCSR000EGX.MAFK.K-562 208 bp overlap
ChIP K562 ENCFF380WHM 281 bp overlap
ChIP MCF-7 ENCFF558JLG 271 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 463 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 274 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 218 bp overlap
MED1 8 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 601 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 224 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 365 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 358 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 118 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 420 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 94 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 347 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 114 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 332 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 326 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 262 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 217 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 101 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 203 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 277 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 146 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 558 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 232 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 223 bp overlap
SMARCA4 1 dataset
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 326 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 318 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 535 bp overlap
ChIP neural cell ENCFF795YGY 499 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 601 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBX5 5 datasets
ChIP G296S GSE85628.TBX5.G296S 276 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 276 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 354 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 311 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 236 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 167 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 219 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 532 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 285 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 156 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 142 bp overlap
ZNF24 2 datasets
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 355 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 161 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 193 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 188 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 193 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF585A 1 dataset
ChIP HEK293T GSE78099.ZNF585A.HEK293T 149 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap