chr5 : 111,044,125 111,044,511
386 bp 126 TFs 0 linked genes
This 386 bp open chromatin element has no linked target genes and is bound by 126 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:111,039,125 – 111,049,511
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
126 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP GSE134626.ARID2.NGP 252 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 362 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 313 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 224 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 213 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 183 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 289 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 237 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 191 bp overlap
CTCF 12 datasets
ChIP AG04450 ENCFF116DJL 268 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 208 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 164 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 178 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 193 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 124 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 135 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 247 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 169 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 137 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 202 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 228 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 332 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 134 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 192 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 386 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 287 bp overlap
FOSL2 3 datasets
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 241 bp overlap
ChIP SK-N-SH ENCFF127ZDW 269 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 200 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 239 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 286 bp overlap
FOXM1 1 dataset
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 153 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 337 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 328 bp overlap
ChIP SK-N-SH ENCFF764OZD 51 bp overlap
ChIP SK-N-SH ENCFF764OZD 359 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 224 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 241 bp overlap
GATA3 4 datasets
ChIP SH-SY5Y ENCFF475HYF 62 bp overlap
ChIP SH-SY5Y ENCFF475HYF 264 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 152 bp overlap
ChIP SK-N-SH ENCFF040SSB 369 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 340 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 283 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 365 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 370 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 360 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 186 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 205 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
HSF1 1 dataset
ChIP MO91_27A_20UM GSE45852.HSF1.MO91_27A_20UM 175 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 58 bp overlap
JUN 1 dataset
ChIP BT-549 GSE46166.JUN.BT-549 306 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCFF551NEQ 320 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 238 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 204 bp overlap
MEF2A 1 dataset
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 135 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 230 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 52 bp overlap
MYB 1 dataset
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 188 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 237 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 346 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 182 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 290 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 290 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 5 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 238 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 207 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 222 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 274 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 209 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 190 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 211 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 174 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 275 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 164 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 196 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 386 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 4 datasets
ChIP IMR-90 ENCFF752PTH 235 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 196 bp overlap
ChIP SK-N-SH ENCFF747MAS 219 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 210 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 215 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RCOR1 3 datasets
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 149 bp overlap
ChIP SK-N-SH ENCFF518EXB 316 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 273 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 163 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 269 bp overlap
SMARCA4 14 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 234 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 230 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 223 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 259 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 199 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 325 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 240 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 320 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 131 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 386 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 351 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 386 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 196 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
SMARCB1 2 datasets
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 280 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCB1.TTC-1240_delC 277 bp overlap
SMARCC1 5 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 304 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 305 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 268 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 176 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 276 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 211 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 282 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 250 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 270 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 181 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 188 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 326 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 255 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 195 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 186 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 208 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 283 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 288 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 341 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 288 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 341 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 291 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 194 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 202 bp overlap
ChIP HEK293 ENCFF033NQQ 139 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF561 3 datasets
ChIP HEK293 ENCFF399XKF 306 bp overlap
ChIP HEK293 ENCFF399XKF 107 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 278 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 284 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 353 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 260 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap