chr4 : 134,624,164 134,625,288
1,124 bp 136 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 136 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:134,619,164 – 134,630,288
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
136 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 524 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 251 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 183 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 184 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 230 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 448 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 209 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 498 bp overlap
ChIP IMR-90_G GSE118494.CTCF.IMR-90_G 138 bp overlap
E2F7 3 datasets
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 162 bp overlap
ChIP hESC GSE17917.EP300.hESC 484 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 269 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 182 bp overlap
HOXA3 2 datasets
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 433 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 584 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF1 3 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 3 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 324 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 325 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 221 bp overlap
LIN54 2 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 379 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MGA::EVX1 3 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 311 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 229 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 325 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 464 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 1024 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 981 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 266 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 1124 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 855 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 622 bp overlap
ChIP hESC GSE20650.NANOG.hESC 282 bp overlap
ChIP hESC GSE18292.NANOG.hESC 224 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 544 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 338 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 204 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 323 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 316 bp overlap
NKX6-3 3 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nkx3-2 2 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e1 3 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 388 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX8 1 dataset
ChIP OVSAHO GSE79893.PAX8.OVSAHO 77 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 216 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 278 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 272 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 358 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 681 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 375 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 494 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 254 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 338 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 702 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 869 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 264 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 307 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 467 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 493 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 794 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 215 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 246 bp overlap
REST 1 dataset
ChIP HEK293 ENCSR896UBV.REST.HEK293 110 bp overlap
SATB1 2 datasets
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 482 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 253 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 249 bp overlap
ChIP hESC_DIFF_D2 GSE75297.SMAD3.hESC_DIFF_D2 237 bp overlap
SMARCA4 6 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 263 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 261 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 326 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 385 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 717 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 633 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 540 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 107 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 479 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 336 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 305 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 283 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 267 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 417 bp overlap
ChIP NPC GSE122631.SOX2.NPC 348 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 516 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 243 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 290 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 395 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 307 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 225 bp overlap
SRY 2 datasets
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 111 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 61 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 293 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 245 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 341 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 143 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB11 2 datasets
ChIP HEK293 ENCFF262GZJ 103 bp overlap
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 121 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 421 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF34 2 datasets
ChIP HEK293 ENCFF481TFV 95 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 161 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 58 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 136 bp overlap
ZNF418 4 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF426 2 datasets
ChIP HEK293 ENCFF957XYN 142 bp overlap
ChIP HEK293 ENCSR224NFP.ZNF426.HEK293 157 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 383 bp overlap
ZNF518A 2 datasets
ChIP HEK293 ENCFF892ULS 52 bp overlap
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 123 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 153 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 52 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap